View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17847_low_9 (Length: 419)
Name: NF17847_low_9
Description: NF17847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17847_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 193 - 402
Target Start/End: Complemental strand, 14855614 - 14855405
Alignment:
| Q |
193 |
tcgctgctttgatgcaagttctttattcatcgttaagcttgaagaaatctgaaactgatagcatattctttgcactgtagaggctatgagagttcacaaa |
292 |
Q |
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| T |
14855614 |
tcgctgctttgatgcaagttctttattcatcgttaagctcgaagaaatcagaaactggtagcatattctttgcattgtagaggctatgagagttcacaaa |
14855515 |
T |
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| Q |
293 |
ttgtcgaaaaacaattagtgttagaattgcagaatatgagatctgatttgaagaaattaaattcaattagattgtgtttgattgagtacggagctcttgc |
392 |
Q |
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| T |
14855514 |
ttatcgaaaaatagttagtgttagaattgcagaatatgagatctgatttgaagaaatgaaattcaattagattgtgtttgattgagtacggagctcttgc |
14855415 |
T |
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| Q |
393 |
agaagagatg |
402 |
Q |
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|||| ||||| |
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| T |
14855414 |
agaatagatg |
14855405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 14855794 - 14855667
Alignment:
| Q |
14 |
cagagaggaaaagaataattagaaaatgacatagagtaattagaaataagacaacgtacttggtgtagaaatataggcttcctcaattttggtgcacaat |
113 |
Q |
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| T |
14855794 |
cagagaggaaaagaataattagaaaatgacatagagtaattagaaataagacaacgtacttggtgtagaaatataggcttcctcaattttggtgcacaat |
14855695 |
T |
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| Q |
114 |
ttgagcatgtcgtgtgtattaaccgaca |
141 |
Q |
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| T |
14855694 |
ttgagcatgtcgtgtgtattaaccgaca |
14855667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 197 - 402
Target Start/End: Original strand, 42639390 - 42639595
Alignment:
| Q |
197 |
tgctttgatgcaagttctttattcatcgttaagcttgaagaaatctgaaactgatagcatattctttgcactgtagaggctatgagagttcacaaattgt |
296 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||| |||||| | |||||| |||||||||||||||||||||||||||||||||| || |
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| T |
42639390 |
tgctttgctgcaagttctttattcatcgttaagcttgaagatatcagaaactagtggcatatcctttgcactgtagaggctatgagagttcacaaatggt |
42639489 |
T |
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| Q |
297 |
cgaaaaacaattagtgttagaattgcagaatatgagatctgatttgaagaaattaaattcaattagattgtgtttgattgagtacggagctcttgcagaa |
396 |
Q |
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| T |
42639490 |
cgaaaaacagttagtgttagaattgcagaatatgagatctgatttgaagaaattagattcaactagattgtgtttgatggagtacggagctcttgcagaa |
42639589 |
T |
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| Q |
397 |
gagatg |
402 |
Q |
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|||||| |
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| T |
42639590 |
gagatg |
42639595 |
T |
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