View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17848_low_1 (Length: 329)
Name: NF17848_low_1
Description: NF17848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17848_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 33816677 - 33816380
Alignment:
| Q |
1 |
tactatattttttaaaacttatttattggtcatctaattcaaccatgattcaacttattgaaccatgattcggacggaggtctcacatgtttgatctccg |
100 |
Q |
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| T |
33816677 |
tactatattttttaaaacttatttattggttatc-----------cgattcaacttattgaaccatgatt----cggaggtctcacatgtttgatctctg |
33816593 |
T |
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| Q |
101 |
atttaattttaaaacattgcttaaattaaagtatgtaagccaatttagtacacatccatcttatatttttaacaattggcagcatcaacttgattactat |
200 |
Q |
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| T |
33816592 |
gtttgatttcaaaacattgcttaaattaaagtatgtcagccaatttagtacacatccatcttatatttttaacaagtggtagcatcaacttgattagtat |
33816493 |
T |
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| Q |
201 |
actaatcttttaatgtgacagacaaggtttttgaagcagcagaggcagctgaaaaacaaactctttctgccacctcccaagctgcaacaagaatggtttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33816492 |
actaatcttttaatgtgacagacaaggtttttgaagcagcagaggcagctgaaaaacaaactctttctgccacctcccaagctgcaacaagaatggtttc |
33816393 |
T |
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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 43161120 - 43161212
Alignment:
| Q |
219 |
cagacaaggtttttgaagcagcagaggcagctgaaaaacaaactctttctgccacctcccaagctgcaacaagaatggtttctaacaggtaaa |
311 |
Q |
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||||||| ||| |||| ||||| || || |||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||| |
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| T |
43161120 |
cagacaaagttcttgatgcagctgaagctgctgaaaaacaaactctttctgccacctccaaagctgcatctagaatggtctctaacaggtaaa |
43161212 |
T |
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