View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17848_low_3 (Length: 255)
Name: NF17848_low_3
Description: NF17848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17848_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 18062037 - 18062277
Alignment:
| Q |
11 |
catcatcattgccactatccttttctttatcactctcactatccgtttcaaatctgacttcaaatctaacatcaaatctgtnnnnnnntctgtaatcaaa |
110 |
Q |
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| T |
18062037 |
catcatcattgccactatccttttctttatcactatca------gtttcaaatctgacttcaaatctaacatcaaatctgtaatcaaatctgtaatcaaa |
18062130 |
T |
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| Q |
111 |
tctataactggacttgtggaatttttcatttttatcctcctcctgcgga------------nnnnnnncaatgatattctctataatggaactatcaata |
198 |
Q |
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| T |
18062131 |
tctataactggacttgtgtaatttttcatttttatcctcctcctgcggattattctcattgttattctcaatgatattatgtataatggaactatcaata |
18062230 |
T |
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| Q |
199 |
ccgatttcagaaagcatataaccttcaatacaactattaatgatatt |
245 |
Q |
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| T |
18062231 |
ccgatttcagaaagcatataaccttcaatacaactattaatgatatt |
18062277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 27008459 - 27008537
Alignment:
| Q |
167 |
caatgatattctctataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatatt |
245 |
Q |
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| T |
27008459 |
caatgatattatgtataatggaactatcaataaagatttcagaaagcatataaccttcaatacaactattaatgatatt |
27008537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 27008402 - 27008434
Alignment:
| Q |
122 |
acttgtggaatttttcatttttatcctcctcct |
154 |
Q |
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| T |
27008402 |
acttgtggaatttttcatttttatcctcctcct |
27008434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 9195603 - 9195565
Alignment:
| Q |
195 |
aataccgatttcagaaagcatataaccttcaatacaact |
233 |
Q |
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| T |
9195603 |
aataccgatttcagaaaggatataaccttcaatacaact |
9195565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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