View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17849_high_1 (Length: 288)
Name: NF17849_high_1
Description: NF17849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17849_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 274
Target Start/End: Complemental strand, 14923303 - 14923068
Alignment:
| Q |
37 |
tacctttatcaatatgttgtgtcgtattaagaaagatgtacagattgctaagcaaattactaaaagattaagaatttacaattgctacgtagctatagat |
136 |
Q |
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| T |
14923303 |
tacctttatcaatatgttgtgtcgtattaagaaagatgtacagattgctaagcaaattactaaaagattaagaatttacaattgctacatagctatagat |
14923204 |
T |
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| Q |
137 |
atttaaggggaaag-nnnnnnngatatagctatagatggataaatgaattagtaattaaaatagtatgagagtttaaaattgacaaatagtgctcgagtc |
235 |
Q |
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| T |
14923203 |
atttgaggggaaagaaaaaaaagatatagctatagatgaataaatgaattag---ttaaaatcgtatgagagtttaaaattgacaaatagtgctcgagtc |
14923107 |
T |
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| Q |
236 |
aaaagtttaaaatatttcaatttcctttgactttgtgat |
274 |
Q |
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| T |
14923106 |
aaaagtttaaaatatttcaatttcctttgactttgtgat |
14923068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 14914866 - 14914630
Alignment:
| Q |
27 |
gtctggtatatacctttatcaatatgttgtgtcgtattaagaaagatgtacagattgctaa-gcaaattactaaaagattaagaatttacaattgctacg |
125 |
Q |
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| T |
14914866 |
gtctggtatagagctttatcaatatgtcgtgtcgtattaagcaagatgtacatattgctaaagcgaattactaaaaaattaagaatttaca--------- |
14914776 |
T |
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| Q |
126 |
tagctatagatatttaagggga-------aagnnnnnnngatatagctatagatggataaatgaattagtaattaaaatagtatgagagtttaaaattga |
218 |
Q |
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| T |
14914775 |
tagctatagatgtttgagggaagaaaaagaaaaaaaaaagatacagctctagatggatcaatgaattggt---taaaatagtatgagagtttaaaattgc |
14914679 |
T |
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| Q |
219 |
caaatagtgctcgagtcaaaagtttaaaatatttcaatttcctttgact |
267 |
Q |
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| T |
14914678 |
ttaatagtgctcgagtcaaaagtttaaaatatttcaatttcccttgact |
14914630 |
T |
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