View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17849_low_2 (Length: 234)
Name: NF17849_low_2
Description: NF17849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17849_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4401079 - 4400873
Alignment:
| Q |
1 |
gttatatatgaacttttctagccatatattttcacacttcacatgtttctcaaggttgatcacaaagtcatcacgagattttctcagttcttgtttctcc |
100 |
Q |
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| T |
4401079 |
gttatatatgaacttttctagccatatattttcacacttcacatgtttctcaaggttgatcccaaagtcatcacgagattttctcagttcttgtttctcc |
4400980 |
T |
|
| Q |
101 |
aattgccgttgaattaattaagggtttgacatttatttaagccatatacaaaaatatgcttttattttaactcaactaccatcatccacccacggttgac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4400979 |
aattgccgttgaattaattaagggtttgacatttatttaagcc--atacaaaaatatgcttttattttaactcaactaccatcatccacccacggttgac |
4400882 |
T |
|
| Q |
201 |
acaaaatag |
209 |
Q |
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||||||||| |
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| T |
4400881 |
acaaaatag |
4400873 |
T |
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