View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1784_high_2 (Length: 370)

Name: NF1784_high_2
Description: NF1784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1784_high_2
NF1784_high_2
[»] chr3 (4 HSPs)
chr3 (13-346)||(44887146-44887482)
chr3 (13-149)||(31778096-31778231)
chr3 (16-149)||(31546813-31546946)
chr3 (51-132)||(28958210-28958291)
[»] chr7 (7 HSPs)
chr7 (13-149)||(17052851-17052987)
chr7 (50-149)||(4616004-4616103)
chr7 (70-149)||(33589151-33589227)
chr7 (82-134)||(45201118-45201171)
chr7 (70-149)||(7253969-7254047)
chr7 (70-106)||(9599421-9599457)
chr7 (70-106)||(9826992-9827028)
[»] chr1 (4 HSPs)
chr1 (19-149)||(22192350-22192481)
chr1 (16-149)||(21404280-21404412)
chr1 (83-149)||(3073252-3073318)
chr1 (70-115)||(31874534-31874579)
[»] chr5 (2 HSPs)
chr5 (78-148)||(17757476-17757546)
chr5 (93-149)||(9387535-9387592)
[»] chr8 (1 HSPs)
chr8 (70-149)||(31263317-31263392)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 44887482 - 44887146
Alignment:
Q  13 ttctttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44887482 ttctttggctattttttgtccttgttctgttggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 44887383  T
Q  113 cttttggtttctaatatatatttcatttttgtttgttnnnnnnnnn---gtgttgtgatagtgagttttgttatattaaatgttgaatctattaattaca 209  Q
    ||||| ||||||||||||||||||||||||| |||||            |||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  44887382 ctttttgtttctaatatatatttcatttttgcttgttaaaaaaaaaaaagtgttgtagtagtgagttttgttatattaaatgttcaatctattaattaca 44887283  T
Q  210 ttccccatgtttaataacggataagtcttttgtattggaatgagtgactcacttaacaatttctcaaagattaagaaaaataaacacatataaaagagat 309  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44887282 ttccccatgtttaataacggataagtcatttgtattggaatgagtgactcacttaacaatttctcaaagattaagaaaaataaacacatataaaagagat 44887183  T
Q  310 agaataatagtttttactaaattatatttatcaagta 346  Q
    |||||||||||||||||||||||||||||||||||||    
T  44887182 agaataatagtttttactaaattatatttatcaagta 44887146  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 31778231 - 31778096
Alignment:
Q  13 ttctttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 112  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31778231 ttctttggctattttt-gcccttgttcttttggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 31778133  T
Q  113 cttttggtttctaatatatatttcatttttgtttgtt 149  Q
    |||||| ||||||||||||||| |||||||| |||||    
T  31778132 cttttgatttctaatatatattccatttttgcttgtt 31778096  T

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Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 31546946 - 31546813
Alignment:
Q  16 tttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttctctt 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||| |||||    
T  31546946 tttggctattttttgtccttgttctgttggctacattttgtccttgtaattgtttacttttgagttatttctagcacaccttgtgcttgaaattcctctt 31546847  T
Q  116 ttggtttctaatatatatttcatttttgtttgtt 149  Q
    ||||||||||||||||||| |||||||| |||||    
T  31546846 ttggtttctaatatatattccatttttgcttgtt 31546813  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 28958210 - 28958291
Alignment:
Q  51 ttttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatata 132  Q
    ||||| |||||||||||  |||||| |||  |||||||||||||||||||||||||| ||||||| || ||  |||||||||    
T  28958210 ttttggccttgtaattgtgtactttcgagcattctctagcacaccttgtgcttgagaattctcttgtgtttcttaatatata 28958291  T

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Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 17052987 - 17052851
Alignment:
Q  13 ttctttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17052987 ttctttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttct 17052888  T
Q  113 cttttggtttctaatatatatttcatttttgtttgtt 149  Q
    |||||||||||||||||||||| |||||||| |||||    
T  17052887 cttttggtttctaatatatattccatttttgcttgtt 17052851  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 4616004 - 4616103
Alignment:
Q  50 attttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 149  Q
    ||||||||  ||||| |||||||||||||||||| |||||||| |||||||||||| |||| ||||| ||||| |||| |||||| |||||||| |||||    
T  4616004 attttgtctctgtaaatgcttacttttgagttttttctagcactccttgtgcttgaaatttttctttgggtttttaatgtatattccatttttgcttgtt 4616103  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 33589151 - 33589227
Alignment:
Q  70 tacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 149  Q
    |||||||||| |||||||||||||||||||||||||||  |||||| | |||||||  ||||||| ||||||||||||||    
T  33589151 tacttttgagctttctctagcacaccttgtgcttgagaaatctcttgt-gtttcta--atatattccatttttgtttgtt 33589227  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 45201171 - 45201118
Alignment:
Q  82 ttctctagcacaccttgtgcttgagatttctctttt-ggtttctaatatatatt 134  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  45201171 ttctctagcacaccttgtgcttgagactcctcttttgggtttctaatatatatt 45201118  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 7254047 - 7253969
Alignment:
Q  70 tacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 149  Q
    |||| ||||| ||| |||||||||||||||||||||  | |||||||  |||| ||||||||||| |||||||| |||||    
T  7254047 tactgttgagatttttctagcacaccttgtgcttgatttctctctttgagttt-taatatatattccatttttgcttgtt 7253969  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 9599457 - 9599421
Alignment:
Q  70 tacttttgagttttctctagcacaccttgtgcttgag 106  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  9599457 tacttttgaggtttctttagcacaccttgtgcttgag 9599421  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 9827028 - 9826992
Alignment:
Q  70 tacttttgagttttctctagcacaccttgtgcttgag 106  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  9827028 tacttttgaggtttctttagcacaccttgtgcttgag 9826992  T

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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 22192350 - 22192481
Alignment:
Q  19 ggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgaga-tttctctttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22192350 ggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagatttctctagcacaccttgtgcttgagactttctctttt 22192449  T
Q  118 ggtttctaatatatatttcatttttgtttgtt 149  Q
    ||||||||||||||||| |||||||| |||||    
T  22192450 ggtttctaatatatattccatttttgcttgtt 22192481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 21404412 - 21404280
Alignment:
Q  16 tttggctattttttgtccttgttctattggctacattttgtccttgtaattgcttacttttgagttttctctagcacaccttgtgcttgagatttctctt 115  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||    
T  21404412 tttggctattttta-tccttgttctattggctacattttgtccttgtaattgtttacttttgagttatttctagcacaccttgtgcttgaaatttctctt 21404314  T
Q  116 ttggtttctaatatatatttcatttttgtttgtt 149  Q
    ||||||||| ||||||||| |||||||| |||||    
T  21404313 ttggtttctgatatatattccatttttgcttgtt 21404280  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 3073318 - 3073252
Alignment:
Q  83 tctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 149  Q
    |||| |||||||||||||||||| ||||||||||  |||| |||||||||||||||||||| |||||    
T  3073318 tctcaagcacaccttgtgcttgaaatttctctttgagtttttaatatatatttcatttttgcttgtt 3073252  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 31874534 - 31874579
Alignment:
Q  70 tacttttgagttttctctagcacaccttgtgcttgagatttctctt 115  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||||||    
T  31874534 tactgttgagctttctttagcacaccttgtgcttgagaattctctt 31874579  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 17757546 - 17757476
Alignment:
Q  78 agttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgt 148  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||  ||||||||||||    
T  17757546 agttttttctagcacaccttgtgcttgaaatttctctttgggtttttaatatatattatatttttgtttgt 17757476  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 9387592 - 9387535
Alignment:
Q  93 accttgtgcttgagatttctctttt-ggtttctaatatatatttcatttttgtttgtt 149  Q
    ||||||||||||||| ||||||||| |||||||||||||||||  ||||||| |||||    
T  9387592 accttgtgcttgagacttctcttttgggtttctaatatatattcaatttttgattgtt 9387535  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 31263392 - 31263317
Alignment:
Q  70 tacttttgagttttctctagcacaccttgtgcttgagatttctcttttggtttctaatatatatttcatttttgtttgtt 149  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||  || |||||||  ||||||| ||||||||||||||    
T  31263392 tactttggagctttctctagcacaccttgtgcttgagaattctc--ttagtttcta--atatattccatttttgtttgtt 31263317  T

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