View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1784_low_1 (Length: 400)

Name: NF1784_low_1
Description: NF1784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1784_low_1
NF1784_low_1
[»] chr1 (1 HSPs)
chr1 (89-386)||(6885156-6885453)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 89 - 386
Target Start/End: Complemental strand, 6885453 - 6885156
Alignment:
Q  89 caatggtgaaaataaacatgtgcatagttcaagactgacttacttgtacaaattagacatagttgtgattttgtttgatactataaggtttttacctact 188  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6885453 caatggtgaaaataaacatgtgcatagtgcaagactgacttacttgtacaaattagacatagttatgattttgtttgatactataaggtttttacctact 6885354  T
Q  189 tccagatcaaagctctaacgctttcaaggaagtggcccttgttagacatcctcgtattggagagtatgcattaggattcatcacatctacagttatacta 288  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6885353 tccagatcaaagctctaatgctttcaaggaagtggcccttgttagacatcctcgtattggagagtatgcattaggattcatcacatctacagttatacta 6885254  T
Q  289 cgaaagagcagagatgaagaagagctttattgtgtttatattcccaccaatcacttgtaccttggagatatttttctcgttagcccaaatgatatttt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6885253 cgaaagagcagagatgaagaagagctttattgtgtttatattcccaccaatcacctgtaccttggagatatttttctcgttagcccaaatgatatttt 6885156  T

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