View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1784_low_3 (Length: 327)
Name: NF1784_low_3
Description: NF1784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1784_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 37820328 - 37820627
Alignment:
| Q |
16 |
caagttgatgggaactttatctggaatctgtggtgccatgatcctcactttatacaaaggcaaaaagttatttaacttttcagtgcacatcgacttattg |
115 |
Q |
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| T |
37820328 |
caagttgatgggaactttatctggaatctgtggtgccatgatcctcactttatacaaaggcaaaaagttatttaacttttcagttcacatcgacttattg |
37820427 |
T |
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| Q |
116 |
gaaaaatatgtgacatcaacaacacatcattctcatgctggttctcatgtttgtggtctcatgctagctttgggcactgctttcagtttctcattatggt |
215 |
Q |
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| T |
37820428 |
gaaaaatatgtgacatcaacaacacatcattcccatgctggttctcatgtttgtggtctcatgctagctttgggcactgctttcagtttctcattatggt |
37820527 |
T |
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| Q |
216 |
atataactcaggtatagtacaattgcttcagcaacttgttaaattttagtacnnnnnnntgtgttaccttttcaatcctaaacttactctgtgtaatatt |
315 |
Q |
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| T |
37820528 |
atataactcaggtatagtacaattgcttcagcaacttgttaaattttagtacaaaaaaatgtgttaccatttcaagcctaaacttactctgtgtaatatt |
37820627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 37823856 - 37823907
Alignment:
| Q |
26 |
ggaactttatctggaatctgtggtgccatgatcctcactttatacaaaggca |
77 |
Q |
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| T |
37823856 |
ggaactttagttggaattggtggtgccatgatcctcacattatacaaaggca |
37823907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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