View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1784_low_4 (Length: 271)
Name: NF1784_low_4
Description: NF1784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1784_low_4 |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 8696774 - 8696537
Alignment:
| Q |
16 |
gacatcatagaagcaaccatttatctaaagagatgatagnnnnnnnntcccttttttacgaggcttctctagtagttagttattagtcacacctgcaata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
8696774 |
gacatcatagaagcaaccatttatctaaagagatgatagcaaaaa--tcacttttttatgaggcttctctagtagttagttattagtcacacctgtaata |
8696677 |
T |
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| Q |
116 |
cattcattattataacctttctaaatgaatattcaaagtaaaggataagccaaaaatcttctaagcacacatcaatgtaggtaataggtataaaccaaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696676 |
cattcattattataacctttctaaatgaatattcaaagtaaaggatatgccaaaaatcttctaagcacacatcaatgtaggtaataggtataaaccaaaa |
8696577 |
T |
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| Q |
216 |
acactattttagttcagtgcttcagttttatagtgttcca |
255 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
8696576 |
acactatgttagttcagtgcttcagttttatagtgttcca |
8696537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 19503 - 19277
Alignment:
| Q |
16 |
gacatcatagaagcaaccatttatctaaagagatgatagnnnnnnnntcccttttttacgaggcttctctagtagttagttattagtcacacctgcaata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||| |||| |
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| T |
19503 |
gacatcatagaagcaaccatttatctaaagagatgatagcaaaaa--tcacttttttatgaggcttctctagtagttagttattagtcacatctgtaata |
19406 |
T |
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| Q |
116 |
cattcattattataacctttctaaatgaatattcaaagtaaaggataagccaaaaatcttctaagcacacatcaatgtaggtaataggtataaaccaaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |
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| T |
19405 |
cattcattattataacctttctaaatgaatattcatagtaaaggatatgccaaaaatcttctaagcacacatcaat-----------gtataaagaaaaa |
19317 |
T |
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| Q |
216 |
acactattttagttcagtgcttcagttttatagtgttcca |
255 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
19316 |
acactatgttagttcagtgcttcagttttatagtgttcca |
19277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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