View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1784_low_5 (Length: 262)
Name: NF1784_low_5
Description: NF1784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1784_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 28800112 - 28799878
Alignment:
| Q |
18 |
acaacgaggcaagtcaatgccttaccaccccattgggctccttcaaatcacccaacccttcaccttatttatcttcaagcaccctcttccacaaggagcc |
117 |
Q |
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| T |
28800112 |
acaacgaggcaagacgatgccttaccaccccattgggctccctaaaatcacccaaccctttaccgtatttatcttcaagcaccctcttccacaaggaacc |
28800013 |
T |
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| Q |
118 |
atcttccttaaaaatcttccatttccactttgttaaaaggctaagattcaccaacttcacatctgtcacccccaaaccaccctttttcttcggttgataa |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
28800012 |
atcttccttaaaaagcttccatttccactttgttaaaaggctaagattcaccaacttcacatttgtcacccccataccaccctttttcttcggttgataa |
28799913 |
T |
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| Q |
218 |
accctcctccaattcacccaacacaatctcctatg |
252 |
Q |
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| T |
28799912 |
cccctcctccaattcacccaacacaatctcctatg |
28799878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 23294078 - 23294190
Alignment:
| Q |
83 |
tatttatcttcaagcaccctcttccacaaggagccatcttccttaaaaatcttccatttccactttgttaaaaggctaagattcaccaacttcacatctg |
182 |
Q |
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||||||||||||||||||||||||||||| || ||||| ||||| || |||||| ||||| |||| | |||||||||||||| ||||||||||||| |
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| T |
23294078 |
tatttatcttcaagcaccctcttccacaaagaaccatcacccttatgaagcttccacttccattttgcaagaaggctaagattcatcaacttcacatctc |
23294177 |
T |
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| Q |
183 |
tcacccccaaacc |
195 |
Q |
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| T |
23294178 |
taactcccaaacc |
23294190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 32775181 - 32775225
Alignment:
| Q |
136 |
ccatttccactttgttaaaaggctaagattcaccaacttcacatc |
180 |
Q |
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| T |
32775181 |
ccatttccactttgccaaaaggctcaaattcaccaacttcacatc |
32775225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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