View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17850_low_1 (Length: 441)
Name: NF17850_low_1
Description: NF17850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17850_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 41066828 - 41066425
Alignment:
| Q |
20 |
gaacacaacatctttacttaaaactttaaggggcgaactatatgagtcatttcttttatatatcttccgcacgtactgaagttccacacatgcttgtaca |
119 |
Q |
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| T |
41066828 |
gaacacaacatctttacttaaaactttaaggggcgaactatatgagtcatttcttttatatatcttccgcacgtactgaagttccacacatgcttgtaca |
41066729 |
T |
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| Q |
120 |
atgcttccactttgtccttttctttaacctttgctgtaaatccattacaaaagagaactatatatagtttgatgatgaaggataaaagaactgtctacat |
219 |
Q |
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| T |
41066728 |
atgcttccactttgtccttttctttaacctttgctgtaaatccattacaaaagagaactatatatagtttgatgatgaaggataaaagaactgtctacat |
41066629 |
T |
|
| Q |
220 |
ctttatcagtaactttaagtgaagatacgagaattttaatatccaacaagtatcaaatgatacagagaaaaatagagagtagtaacacagaaaaaatagt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| |
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| T |
41066628 |
ctttatcagtaactttaagtgaagatacgagaattttaatatccaacaagtatcaaatgataaagagaaaaatagagagtagtaacatagaaaaactagt |
41066529 |
T |
|
| Q |
320 |
actgctgctatgttttagatgagatagaacagtagcagaaaaccaactcatcatgtcaaacaatgcattaaattttcttatcttgtttctcactatctcc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066528 |
actgctgctatgttttagatgagatagaacagtagcagaaaaccaactcatcatgtcaaacaatgcattaaattttcttatcttgtttctcactatctcc |
41066429 |
T |
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| Q |
420 |
ttgt |
423 |
Q |
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|||| |
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| T |
41066428 |
ttgt |
41066425 |
T |
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