View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17850_low_3 (Length: 249)

Name: NF17850_low_3
Description: NF17850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17850_low_3
NF17850_low_3
[»] chr7 (16 HSPs)
chr7 (1-238)||(4711480-4711717)
chr7 (1-238)||(4845408-4845657)
chr7 (28-238)||(4696613-4696835)
chr7 (1-238)||(4653946-4654195)
chr7 (100-238)||(4637307-4637445)
chr7 (99-238)||(4864372-4864514)
chr7 (15-238)||(4673153-4673388)
chr7 (111-238)||(4783353-4783480)
chr7 (111-238)||(4815782-4815909)
chr7 (10-238)||(4644157-4644385)
chr7 (11-80)||(4663310-4663379)
chr7 (1-88)||(4783231-4783318)
chr7 (1-88)||(4815660-4815747)
chr7 (105-167)||(4631451-4631513)
chr7 (10-88)||(4637469-4637544)
chr7 (47-88)||(4864537-4864578)
[»] chr4 (1 HSPs)
chr4 (128-238)||(18925280-18925387)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4711480 - 4711717
Alignment:
Q  1 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagcccttattatgagaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711480 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagcccttattatgagaagg 4711579  T
Q  101 aaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711580 aaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgc 4711679  T
Q  201 tttcattaacggaatcgaaattgtgtctatgccttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4711680 tttcattaacggaatcgaaattgtgtctatgccttctt 4711717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4845408 - 4845657
Alignment:
Q  1 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------ 88  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||                
T  4845408 acttcataccagaactttgatccctccaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttcactttggcttc 4845507  T
Q  89 attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaa 188  Q
    || | |||  ||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| |||||||||||  | |  ||    
T  4845508 atgacgaggtggaaaaaattaccaaagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaa 4845607  T
Q  189 tccttattatgctttcattaacggaatcgaaattgtgtctatgccttctt 238  Q
    ||||| |||||||||| |||||||||||||| ||||||| ||||||||||    
T  4845608 tcctttttatgctttcgttaacggaatcgaagttgtgtcgatgccttctt 4845657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 4696613 - 4696835
Alignment:
Q  28 aatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaag 115  Q
    ||||| ||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||            || ||||  | ||||||||||||||||    
T  4696613 aatgcacttttctctgttaaagtaaacaacaacgttacccttcttaaaaacttcaacccttctctttggttctatcatgatgacgaaaaaatcaccaaag 4696712  T
Q  116 aatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaat 215  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||    
T  4696713 aatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaat 4696812  T
Q  216 cgaaattgtgtctatgccttctt 238  Q
     ||| ||||||| ||||||||||    
T  4696813 agaagttgtgtcaatgccttctt 4696835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4654195 - 4653946
Alignment:
Q  1 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------ 88  Q
    ||||| || ||||| ||||| ||||| ||||| |||||||||||  ||||||||||||| ||||| ||||||||||||||||  ||||                
T  4654195 acttcgtatcaaaaatttgaaccctcaaatgcacttttctctgttgaagtaaacaacaaacttacacttcttaaaaacttcaatccttcactttggattc 4654096  T
Q  89 attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaa 188  Q
    || ||||   ||||| ||||||||||||||||||||| ||| || |||| ||| ||||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  4654095 atgatgatggggaaacaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaa 4653996  T
Q  189 tccttattatgctttcattaacggaatcgaaattgtgtctatgccttctt 238  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  4653995 tccttattatgctttcattaatggaattgaagttgtgtctatgccttctt 4653946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 4637445 - 4637307
Alignment:
Q  100 gaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatg 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||| |||| |||||| || |||||||||| |||||    
T  4637445 gaaaaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatg 4637346  T
Q  200 ctttcattaacggaatcgaaattgtgtctatgccttctt 238  Q
    |||| |||||||| |||||| ||||||| ||||||||||    
T  4637345 cttttattaacgggatcgaagttgtgtcaatgccttctt 4637307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 4864514 - 4864372
Alignment:
Q  99 ggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttat 195  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    || || |||||||| ||||||||||||    
T  4864514 ggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttat 4864415  T
Q  196 tatgctttcattaacggaatcgaaattgtgtctatgccttctt 238  Q
    ||||| |||||||| ||||| ||| | ||||||||||||||||    
T  4864414 tatgccttcattaatggaatagaagtcgtgtctatgccttctt 4864372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 4673388 - 4673153
Alignment:
Q  15 ctttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaa 102  Q
    ||||||||||||||||||  |||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||            || || |  |||||    
T  4673388 ctttgatccctccaatgcaattttctctatcaaagttaacaacaatattacccttcttaaaaacttcaaccctttcctttggattcatgattatgaggaa 4673289  T
Q  103 aaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctt 202  Q
    | |||||||||||||| ||| || |||||||| || ||||||||||||| ||||| ||||||||||| || ||| ||  | ||||||  | | |||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctt 4673189  T
Q  203 tcattaacggaatcgaaattgtgtctatgccttctt 238  Q
    ||||||||||||||||||||||||| ||||||||||    
T  4673188 tcattaacggaatcgaaattgtgtcaatgccttctt 4673153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 4783353 - 4783480
Alignment:
Q  111 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 210  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaac 4783452  T
Q  211 ggaatcgaaattgtgtctatgccttctt 238  Q
    ||||||||| ||||||||||||||||||    
T  4783453 ggaatcgaagttgtgtctatgccttctt 4783480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 4815782 - 4815909
Alignment:
Q  111 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 210  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaac 4815881  T
Q  211 ggaatcgaaattgtgtctatgccttctt 238  Q
    ||||||||| ||||||||||||||||||    
T  4815882 ggaatcgaagttgtgtctatgccttctt 4815909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 4644385 - 4644157
Alignment:
Q  10 caaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgaga 97  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||            || ||||      
T  4644385 caaaattttgaaccctcaaatgcacttttctctgtcaaagtaaacaacaatctcacccttcttcaaaacttcaacccttcactttggcttcatcatgatg 4644286  T
Q  98 aggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttatta 197  Q
    || | || |||| |||||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||  |||           ||||||  |  |||    
T  4644285 agaataatatcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattcc-caca-----------tcaaatgttagtta 4644198  T
Q  198 tgctttcattaacggaatcgaaattgtgtctatgccttctt 238  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  4644197 tgctttcattaacggaatcgaagttgtgtctatgccttctt 4644157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 4663379 - 4663310
Alignment:
Q  11 aaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaactt 80  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  4663379 aaaactttgaaccctccaatgcacttttctctgtcaaactaaacgacaatcttacccttcttaaaaactt 4663310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4783231 - 4783318
Alignment:
Q  1 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt 88  Q
    |||||||| ||||| |||||  ||||  |||| |||||||||||  |||||||||||||  ||||||||||||||||||||| |||||    
T  4783231 acttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaacattacccttcttaaaaacttcaaccctt 4783318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4815660 - 4815747
Alignment:
Q  1 acttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt 88  Q
    |||||||| ||||| |||||  ||||  |||| |||||||||||  |||||||||||||  ||||||||||||||||||||| |||||    
T  4815660 acttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaacattacccttcttaaaaacttcaaccctt 4815747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 4631513 - 4631451
Alignment:
Q  105 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 167  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4631513 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 4631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 4637544 - 4637469
Alignment:
Q  10 caaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt 88  Q
    ||||||||||| || |||| |||  |||||||||||||||| ||| ||   |||||||||||||||||||||| |||||    
T  4637544 caaaactttgaaccttccagtgcaattttctctgtcaaagtgaacgac---cttacccttcttaaaaacttcaaccctt 4637469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 4864578 - 4864537
Alignment:
Q  47 aagtaaacaacaatcttacccttcttaaaaacttcagccctt 88  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  4864578 aagtaaacaacaaaattacccttcttaaaaacttcaaccctt 4864537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 18925280 - 18925387
Alignment:
Q  128 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 227  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| |||||||||  ||||  |   |||||||||||| |||||||| || || |||||    
T  18925280 aaatgaaaccaactgagaagttaaatataactttcattccaaacaccataaatcaaccaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 18925376  T
Q  228 tatgccttctt 238  Q
     ||||||||||    
T  18925377 catgccttctt 18925387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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