View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17850_low_4 (Length: 241)
Name: NF17850_low_4
Description: NF17850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17850_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4711362 - 4711137
Alignment:
| Q |
1 |
attaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4711362 |
attaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatct |
4711263 |
T |
|
| Q |
101 |
aaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4711262 |
aaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagata |
4711163 |
T |
|
| Q |
201 |
gtagggtaattttagtgtgaaatttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4711162 |
gtagggtaattttagtgtgaaatttt |
4711137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4845290 - 4845065
Alignment:
| Q |
1 |
attaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatct |
100 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
4845290 |
attaggagatgatttaaaagatggatttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaatccaaattcgtttatct |
4845191 |
T |
|
| Q |
101 |
aaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagata |
200 |
Q |
| |
|
|||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||||| |
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| T |
4845190 |
aaggcaacattgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatgagttaataactagagggaacaaaaccaaatagatagata |
4845091 |
T |
|
| Q |
201 |
gtagggtaattttagtgtgaaatttt |
226 |
Q |
| |
|
||||||| |||||||||||||||||| |
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|
| T |
4845090 |
gtagggtgattttagtgtgaaatttt |
4845065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 4637684 - 4637873
Alignment:
| Q |
14 |
ttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgt |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
4637684 |
ttaaaagatgggtttgtggtttttggttcaatgaaagtaaagagatttttgttattaatattatcaccaacccaaattcgtttatctaaggcagtattgt |
4637783 |
T |
|
| Q |
114 |
ttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagta |
203 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |||| ||||||| |
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|
| T |
4637784 |
cggttaaggagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactaaagggaaaagtagcaaaaagagggatagta |
4637873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 4654327 - 4654515
Alignment:
| Q |
15 |
taagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtt |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||||||| ||||||| ||||||||| ||||||||| |||||||| |
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|
| T |
4654327 |
taagagatgggttcgtggtttttggttcaatgaaagtaaagatatttttgttatcaatattctcaccaatccaaattcgtttatctaaggtagtagtgtc |
4654426 |
T |
|
| Q |
115 |
tgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagta |
203 |
Q |
| |
|
|||| | ||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||| |
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|
| T |
4654427 |
tgttagggagccacaatcgatagctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagta |
4654515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 4783098 - 4782934
Alignment:
| Q |
13 |
tttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtg |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||| | ||| |||||||||||| |
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|
| T |
4783098 |
tttaagagatgggtttgtattttttggttcaatgaaggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtg |
4782999 |
T |
|
| Q |
113 |
tttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagg |
177 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||| |||||| |
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|
| T |
4782998 |
tttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaaatagcaattagagg |
4782934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 4815527 - 4815363
Alignment:
| Q |
13 |
tttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtg |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||| | ||| |||||||||||| |
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|
| T |
4815527 |
tttaagagatgggtttgtattttttggttcaatgaaggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtg |
4815428 |
T |
|
| Q |
113 |
tttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagg |
177 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||| |||||| |
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| T |
4815427 |
tttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaactagcaattagagg |
4815363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 4696442 - 4696234
Alignment:
| Q |
15 |
taagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtt |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |||||| |||| ||||||| |||||||||||||||| ||||| | || |||| |||||| |
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|
| T |
4696442 |
taagagatgtgtttgtggtttttggttcattgaaggaaaagagttttgtgttatcattattatcaccaacccatattcgtttgtcgaagg---tagtgtc |
4696346 |
T |
|
| Q |
115 |
tgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagtagggtaatttta |
214 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||| ||||||||| ||| | |||||| |
|
|
| T |
4696345 |
tgatgaggagccacaattgatggctaaattgtaaatagggtcgtatgaggtagcaactagagggaacaatagcaaaatgagagatagcaggatgatttta |
4696246 |
T |
|
| Q |
215 |
gtgtgaaatttt |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4696245 |
gtgtgaaatttt |
4696234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 4644514 - 4644711
Alignment:
| Q |
6 |
gtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggc |
105 |
Q |
| |
|
|||||| |||| ||||||| || |||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4644514 |
gtgatgttttaggagatggattagtggtttttggttcaatgaaagtaaagagttttgtgttatcattattatcaccaacccaaattcgactatctaaggc |
4644613 |
T |
|
| Q |
106 |
agtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagta |
203 |
Q |
| |
|
||||||||| |||||| |||||||| | ||||||| ||||||| || ||||||||| |||| | ||||||||||| |||||| |||||| |||| |
|
|
| T |
4644614 |
agtagtgttcgttgaggagccacaactaatggctatattgtaaattggattgtatgaggtagctagtagagggaacagtagcaaaatgagagaaagta |
4644711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 4673534 - 4673740
Alignment:
| Q |
15 |
taagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatatt---atcaccaacccaaattcgactatctaaggcagtagt |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||| ||||| |||| |||| || | | |
|
|
| T |
4673534 |
taagagatgggtatgtggtttttggttcaatgaaagtaaagagatttgtgttattaatattattatcaccaacccacattcggttatcgaaggtagcatt |
4673633 |
T |
|
| Q |
112 |
gtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagtagggtaatt |
211 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||| | ||||||||| ||| |
|
|
| T |
4673634 |
gtttgttgaggaaccacaattgatggctaaattgtaaattggtttgtatgaggtagcaactagagggaacaagagcaaaatgagcggtagtagggtgatt |
4673733 |
T |
|
| Q |
212 |
ttagtgt |
218 |
Q |
| |
|
|| |||| |
|
|
| T |
4673734 |
tttgtgt |
4673740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 4864744 - 4864899
Alignment:
| Q |
3 |
taggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaa |
102 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4864744 |
taggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgtttatctaa |
4864843 |
T |
|
| Q |
103 |
ggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatg |
161 |
Q |
| |
|
| ||||| ||||||||| |||||||| |||||||||| || |||||||| |||||| |
|
|
| T |
4864844 |
g---gtagtatttgttgaggagccacaaccgatggctaaactgaaatcagggctgtatg |
4864899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 4663524 - 4663715
Alignment:
| Q |
12 |
atttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagt |
111 |
Q |
| |
|
||||||||||||| ||| | |||||||| |||| ||| | |||||| | || ||||||| ||||||||||||||||||||| || || ||||| | |
|
|
| T |
4663524 |
atttaagagatggattttttgtttttggctcaaggaaagaaaagagttctgtgttatcattattatcaccaacccaaattccttcgtccgagtcagtatt |
4663623 |
T |
|
| Q |
112 |
gtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagta |
203 |
Q |
| |
|
|||| | | | |||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
4663624 |
gtttatatcggaaccacaactgatggctaaattgtaaattgggttgtatgaggtagcaattagagggaacaatagcaaaatgagagatagta |
4663715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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