View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17850_low_5 (Length: 223)
Name: NF17850_low_5
Description: NF17850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17850_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 38423063 - 38422890
Alignment:
| Q |
28 |
aaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatcatcattcaagtggaacagacttactttgcctgtttc |
127 |
Q |
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| T |
38423063 |
aaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatcatcattcaagtggaacacacttactttgcctgtttc |
38422964 |
T |
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| Q |
128 |
attcatggaagatgttgtttttaaggttgtctctgcctttgaggctgttgttcttgttctcaccctatgcttct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38422963 |
attcatggaagatgttgtttttaaggttgtctctgcctttgaggctgttgttcttgttctcaccctctgcttct |
38422890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 38413179 - 38413003
Alignment:
| Q |
28 |
aaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatcatca---ttcaagtggaacagacttactttgcctgt |
124 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||| ||| || |
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| T |
38413179 |
aaagatcgttgttgaagaggctgaagaaggaaacattgaggttgaagtttttgtggcaatcttcatcaggattcaggtggaacagacttacttcgccggt |
38413080 |
T |
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| Q |
125 |
ttcattcatggaagatgttgtttttaaggttgtctctgcctttgaggctgttgttcttgttctcaccctatgcttct |
201 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38413079 |
ttcattcatggaagatattgtttttaaggttgtctctgcctttgaggctgttgttcttgttctcaccctctgcttct |
38413003 |
T |
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