View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17850_low_6 (Length: 216)
Name: NF17850_low_6
Description: NF17850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17850_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 34763861 - 34764042
Alignment:
| Q |
20 |
aggagtggatgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtggg |
119 |
Q |
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| T |
34763861 |
aggagtggatgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtggg |
34763960 |
T |
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| Q |
120 |
ttatccaaaagatgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttg |
201 |
Q |
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| T |
34763961 |
ttatccaaaagatgaagatgaccaatgaaaggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttg |
34764042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 34780251 - 34780070
Alignment:
| Q |
20 |
aggagtggatgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtggg |
119 |
Q |
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| T |
34780251 |
aggagtggatgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaagggccataacgctttcctaacttgataagagtgtggtgaagaagtggg |
34780152 |
T |
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| Q |
120 |
ttatccaaaagatgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttg |
201 |
Q |
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| T |
34780151 |
ttatccaaaaggtgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaaggtggcgaagagcctttg |
34780070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 34755895 - 34756066
Alignment:
| Q |
30 |
gcaacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaa |
129 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34755895 |
gcaacaatggtaggcatggaaccaaagtaaagagtgtacaaagggccataacgttctcctaacttgataagagtgtggtgaagaagagggttatccaaaa |
34755994 |
T |
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| Q |
130 |
gatgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttg |
201 |
Q |
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| T |
34755995 |
ggtgaagatgaccaatggatggaagacgaggtttgggactcggaggattgggaaggtggcgaagagcctttg |
34756066 |
T |
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