View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17851_low_1 (Length: 615)
Name: NF17851_low_1
Description: NF17851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17851_low_1 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 36 - 565
Target Start/End: Complemental strand, 46165957 - 46165428
Alignment:
| Q |
36 |
aagtactgcttccgatcccatgttcaggaaccgctgaaccttccagagaaagttaacataccgaaacataatagcagcactagcttcatcaaaagcattg |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46165957 |
aagtactgcttccgatcccatgttcaggaaccgctgaaccttccagagaaagttaacataccgaaacataatagcagcactagcttcatcaaaagcattg |
46165858 |
T |
|
| Q |
136 |
gaaaattgtgtgccttctctataggttccacacattgtgtccaattctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46165857 |
gaaaattgtgtgccttctctataggttccacacattgtgtccaattctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggt |
46165758 |
T |
|
| Q |
236 |
cctgccaataagcaagatatgcagattagaccaagattgttactacctctgtccctgagtatatgatcttgttgactaaatcataaatattaagagcaag |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
46165757 |
cctgccaataagcaagatatgcagattagaccaagattgttactacctctgtccctaagtatatgatcttgttgactaaatcacaaaaattaagagcaag |
46165658 |
T |
|
| Q |
336 |
ggaaaatttcaagaggttctatagttagggacggaggtagtattacgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctgcagct |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46165657 |
ggaaaatttcaagaggttctatagttagggacggaggtagtattacgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctgcagct |
46165558 |
T |
|
| Q |
436 |
caataatattgtttgaggttgcagcttcggacactatccctgcaagttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagt |
535 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46165557 |
caataatattgtttgaggttgcagcttcagacactatccctgcaagttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagt |
46165458 |
T |
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| Q |
536 |
tgagaattgatagcttgctgattttctctg |
565 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
46165457 |
tgagaattgatagcttgctgattttctctg |
46165428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 36 - 250
Target Start/End: Complemental strand, 46158880 - 46158666
Alignment:
| Q |
36 |
aagtactgcttccgatcccatgttcaggaaccgctgaaccttccagagaaagttaacataccgaaacataatagcagcactagcttcatcaaaagcattg |
135 |
Q |
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|||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
46158880 |
aagtaccgcttccgatccaatgttcaggaacctctgaaccttccagagaaagttaacataccaaaacataatagtagcactagcttcattaaaagcattg |
46158781 |
T |
|
| Q |
136 |
gaaaattgtgtgccttctctataggttccacacattgtgtccaattctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggt |
235 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46158780 |
gaaaattgtgtgccttctttagaggttccacacattgtgtccagctctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggt |
46158681 |
T |
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| Q |
236 |
cctgccaataagcaa |
250 |
Q |
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||||||||||||||| |
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| T |
46158680 |
cctgccaataagcaa |
46158666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 355 - 482
Target Start/End: Complemental strand, 46158626 - 46158499
Alignment:
| Q |
355 |
tatagttagggacggaggtagtattacgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctgcagctcaataatattgtttgaggt |
454 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| || ||| |||||||||||||||||||||||||||||||||| |
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| T |
46158626 |
tatagttagggacggaagtagtattacgaagatcataagaattttctgtaattcaaactaaacaacattttacctgcagctcaataatattgtttgaggt |
46158527 |
T |
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| Q |
455 |
tgcagcttcggacactatccctgcaagt |
482 |
Q |
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||| ||||| ||||||||| ||||||| |
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| T |
46158526 |
tgctgcttcaaacactatccttgcaagt |
46158499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 474 - 557
Target Start/End: Original strand, 46237715 - 46237798
Alignment:
| Q |
474 |
cctgcaagttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagttgagaattgatagcttgctgat |
557 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46237715 |
cctgcaagttttaccgcattagatttaaacagtgagctgctgaagtctctcaataacttagttgagaattgatagcttgctgat |
46237798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 442 - 562
Target Start/End: Original strand, 14650 - 14769
Alignment:
| Q |
442 |
tattgtttgaggttgcagcttcggacactatccctgcaagttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagttgagaa |
541 |
Q |
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||||||||||| |||||||||| |||| ||||| | |||||||||| ||| | ||||||||||| || |||| || ||||||||||||||||||||||| |
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| T |
14650 |
tattgtttgagattgcagcttcagacattatcc-tacaagttttactgcactggatttgaacacggatctgcctaattctctcaataacttagttgagaa |
14748 |
T |
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| Q |
542 |
ttgatagcttgctgattttct |
562 |
Q |
| |
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| T |
14749 |
tcgatagcttgctaattttct |
14769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 442 - 562
Target Start/End: Original strand, 3839168 - 3839287
Alignment:
| Q |
442 |
tattgtttgaggttgcagcttcggacactatccctgcaagttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagttgagaa |
541 |
Q |
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||||||||||| |||||||||| |||| ||||| | |||||||||| ||| | ||||||||||| || |||| || ||||||||||||||||||||||| |
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| T |
3839168 |
tattgtttgagattgcagcttcagacattatcc-tacaagttttactgcactggatttgaacacggatctgcctaattctctcaataacttagttgagaa |
3839266 |
T |
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| Q |
542 |
ttgatagcttgctgattttct |
562 |
Q |
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| T |
3839267 |
tcgatagcttgctaattttct |
3839287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 564
Target Start/End: Complemental strand, 26777250 - 26777209
Alignment:
| Q |
523 |
tcaataacttagttgagaattgatagcttgctgattttctct |
564 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||| |||| |
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| T |
26777250 |
tcaataactttgttgagaattgatagcttgcagatttgctct |
26777209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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