View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17851_low_2 (Length: 503)
Name: NF17851_low_2
Description: NF17851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17851_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 195 - 472
Target Start/End: Original strand, 3071950 - 3072228
Alignment:
| Q |
195 |
caggtgtgttagtatactttcaggtccattgtattgtagtatgtacattggtccaaggcaccagtggttgcagtcggagaggcctgtgtacattggtgcg |
294 |
Q |
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| T |
3071950 |
caggtgtgttagtatactttcaggtccattgtattgtagtatgtacattggtccaaggcaccagtggttgcagtcggagaggcctgtgtacattggtgcg |
3072049 |
T |
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| Q |
295 |
aggctgattttgttcggtggtgccacacttcccctgcacttgaaggcaattatgttggaaatatgctcaaacttgaatgtagtgactaacgtcttctcat |
394 |
Q |
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| T |
3072050 |
aggctgattttgttcggtggtgccacactttccctgcacttgaaggcaattatgttggaaatatgctcaaacttgaatgtagtgactaacgtcttctcat |
3072149 |
T |
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| Q |
395 |
atgtttgcatatggagcta-ctgactcaatgcaaaagataaggtttcgtcgaagtggtagcttttgattctttctactt |
472 |
Q |
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| T |
3072150 |
atgtttgcatatggagctatccgactcaatgtaaaggataaggtttcgtcgaagtggtagcttttcattctttctactt |
3072228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 3071876 - 3071954
Alignment:
| Q |
96 |
ttgattggttctgctttattatagtgtcaattaattgatttaaccaaccaattattaacaatgtcatccatattcaggt |
174 |
Q |
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| T |
3071876 |
ttgattggttctgctttattatagtgtcaattaattgatttaaccaaccaattattaacaatgtcatccatattcaggt |
3071954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 320
Target Start/End: Original strand, 17897602 - 17897636
Alignment:
| Q |
286 |
attggtgcgaggctgattttgttcggtggtgccac |
320 |
Q |
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| T |
17897602 |
attggtccgaggctgattttgttcggtggtgccac |
17897636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 29264074 - 29264000
Alignment:
| Q |
419 |
tcaatgcaaaagataaggtttcgtcgaagtgg-tagcttttgattctttctacttcatgactcctcaagtgcata |
492 |
Q |
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| T |
29264074 |
tcaatgcaaaagcaaaggtttcatcagagtggatggcttttggttctttctacttcatgattcctcaggtgcata |
29264000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 7240579 - 7240659
Alignment:
| Q |
4 |
ttaatattctttgaatgaccaaaaatggaattaagtaggaaaaagatgaatttcaatgcatgatcaaacattgataataga |
84 |
Q |
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| T |
7240579 |
ttaatattctttgaatgaccaatttaggaattaattaggaaaaagagtgttttaaatggatgataaaacattgttaataga |
7240659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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