View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17851_low_3 (Length: 463)

Name: NF17851_low_3
Description: NF17851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17851_low_3
NF17851_low_3
[»] chr3 (5 HSPs)
chr3 (10-377)||(10074048-10074414)
chr3 (11-109)||(10136100-10136199)
chr3 (11-93)||(10356479-10356562)
chr3 (382-447)||(10136237-10136302)
chr3 (383-447)||(10074481-10074545)
[»] chr2 (4 HSPs)
chr2 (47-378)||(36091742-36092081)
chr2 (11-190)||(31699572-31699751)
chr2 (11-184)||(29782986-29783159)
chr2 (301-378)||(29783284-29783361)
[»] scaffold0069 (2 HSPs)
scaffold0069 (47-201)||(65312-65466)
scaffold0069 (295-378)||(65569-65652)
[»] chr1 (2 HSPs)
chr1 (47-201)||(20386703-20386857)
chr1 (295-378)||(20386960-20387043)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 377
Target Start/End: Original strand, 10074048 - 10074414
Alignment:
Q  10 gcaaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10074048 gcaaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacagtctctgcttcagaatgacataaagggcaggaggtgtc 10074147  T
Q  110 tagaacaatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattggtgct--- 206  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       
T  10074148 tagaacaatacctttcctctgttggttgtgtctatttgggagaatgttctttgccaagcgccacatgaagtttttgatcttgttggggattggtgctttg 10074247  T
Q  207 ---------ttccatagtctttcgttcctgtgatgggatggtccgggctggagattttctttgattttgttcaa-aagaggtatgctgatctgatctgac 296  Q
             ||||||||||||||||||||| | |||||||||||  |||| ||||||||| ||||| || |||| ||| ||||||||                 
T  10074248 caaatttcattccatagtctttcgttcctgcgttgggatggtcctagctgaagattttctctgattctgctcaataagtggtatgct------------- 10074334  T
Q  297 agtgtagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaatttt 377  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10074335 -gtgtagcaaccatttttctcccagcgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaatttt 10074414  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 10136100 - 10136199
Alignment:
Q  11 caaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaa-taaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtc 109  Q
    |||||||||||||||||  |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  10136100 caaaggcgatgcaaacatagctagtttggacaaattacagttcatcaaataaatgtgccacagtctcagcttcagaatgacataaagggccggaggtgtc 10136199  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 10356562 - 10356479
Alignment:
Q  11 caaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaa-taaatgttccacagtctcagcttcagaatgacata 93  Q
    |||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  10356562 caaaggcgatgcaaacatagctagtttggacaaattacagttcatcaaataaatgttccacagtctcagcttcagaatgacata 10356479  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 382 - 447
Target Start/End: Original strand, 10136237 - 10136302
Alignment:
Q  382 gcttccaccaaggcttcctccctcaaagaacagttattgatcttcgatgtcaaaatttcgaggttt 447  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  10136237 gcttccaccaaggcttcctccctcaaagaacagttatcgatcttcgatgtcaaaattttgaggttt 10136302  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 447
Target Start/End: Original strand, 10074481 - 10074545
Alignment:
Q  383 cttccaccaaggcttcctccctcaaagaacagttattgatcttcgatgtcaaaatttcgaggttt 447  Q
    |||||||||||||||||| |||||||| |||||||| | |||| |||||||||||||||||||||    
T  10074481 cttccaccaaggcttcctgcctcaaagtacagttatcgctctttgatgtcaaaatttcgaggttt 10074545  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 378
Target Start/End: Complemental strand, 36092081 - 36091742
Alignment:
Q  47 acagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagtt 146  Q
    |||||||||||||| |||||||||||| ||  | |||| |||||||| ||||||  | ||||| ||   ||||||||||||||| || || || ||||||    
T  36092081 acagttcatgaatagatgttccacagtttccacatcagcatgacatatagggcataaagtgtcgagggaaatacctttcctctgcagattttgcctagtt 36091982  T
Q  147 gggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattggtg------------ctttccatagtctttcgttcctgtgatggg 234  Q
    ||||| ||||||||||||||||||||||||||||| || | ||||||||| |||| ||            | ||||||||||| ||||||||||| ||||    
T  36091981 gggaggatgttctttgccaagcgccacatgaagttcttcaccttgttgggaattgatgccttccaaatttccttccatagtctctcgttcctgtggtggg 36091882  T
Q  235 atggtccgggctggagattttctttgattttgttcaa-aagaggtatgctgatctgatctgacagtgtagcaaccatttttctcccagtgccagcaaatc 333  Q
    | || || || ||||| |||||| | || ||| |||| ||| | || |     |||| ||||||||||| ||||||||||||||||| ||||||||  |     
T  36091881 acggccctggttggaggttttctctaatcttgctcaataagtgatagg-----ctgacctgacagtgtaacaaccatttttctcccaatgccagcatctt 36091787  T
Q  334 ttgtcttttggaagggattgggatataggaatacttacaattttt 378  Q
    |||||||| || || ||||| |||| ||| ||||| |||||||||    
T  36091786 ttgtctttggggagagattgtgatagagggatactcacaattttt 36091742  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 31699751 - 31699572
Alignment:
Q  11 caaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtct 110  Q
    ||||||||| ||||||| ||| |||||||| | ||| || |||||||| ||||||||| |||| || | |||||| |||||  | ||||| ||||||||     
T  31699751 caaaggcgaagcaaacaatgccagtttggatatattgcaattcatgaacaaatgttccgcagtttcggtttcagagtgacaagaggggcaagaggtgtca 31699652  T
Q  111 agaacaatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcgccacatgaagttttttatctt 190  Q
    ||| |||||||||| || || || ||   ||| |||||||| || ||||| ||||  ||||||||||| ||||| |||||    
T  31699651 agagcaataccttttctttgcagattggatcttgttgggaggatattcttagccagccgccacatgaaatttttaatctt 31699572  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 29782986 - 29783159
Alignment:
Q  11 caaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtct 110  Q
    |||||| || |||||||| |||  ||| ||||| ||||||||||| ||||| ||||||||||| ||  | |||||||||||||| |||||  | |  ||     
T  29782986 caaaggtgaggcaaacagggctcattttgacaagttacagttcataaataagtgttccacagtttccacatcagaatgacataacgggcataaaggatcc 29783085  T
Q  111 agaacaatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcgccacatgaagttttt 184  Q
    |     ||||||||| | ||||| |  || || |||||||| |||||||||||||| |||||||||||||||||    
T  29783086 aaggatatacctttcttttgtagatcgtgcctggttgggaggatgttctttgccaaacgccacatgaagttttt 29783159  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 29783284 - 29783361
Alignment:
Q  301 tagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt 378  Q
    ||||| |||| ||||||||| ||||||||||| || ||| | |||||||| || |||||||| |||||||||||||||    
T  29783284 tagcagccatctttctcccaatgccagcaaattttatctctaggaagggaatgtgatatagggatacttacaattttt 29783361  T

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Target: scaffold0069 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 65312 - 65466
Alignment:
Q  47 acagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagtt 146  Q
    |||||||||||| | |||||||||||| ||  | |||| |||||||| ||||||  | ||||| |||  ||||||||||||||| || || || ||||||    
T  65312 acagttcatgaaaagatgttccacagtttccacatcagcatgacatatagggcataaagtgtcgagagaaatacctttcctctgcagattttgcctagtt 65411  T
Q  147 gggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattg 201  Q
    ||||| |||||||||||||||| |||||||||||| || | ||||||||| ||||    
T  65412 gggaggatgttctttgccaagcaccacatgaagttcttcaccttgttgggaattg 65466  T

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Target: scaffold0069; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 65569 - 65652
Alignment:
Q  295 acagtgtagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt 378  Q
    |||||||| ||||||||||||||||| ||||| || || |||||||| || || |||||||| | ||| ||||| |||||||||    
T  65569 acagtgtaacaaccatttttctcccaatgccaacatattttgtctttggggagagattgggagagagggatactcacaattttt 65652  T

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Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 20386703 - 20386857
Alignment:
Q  47 acagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagtt 146  Q
    |||||||||||| | |||||||||||| ||  | |||| |||||||| ||||||  | ||||| |||  ||||||||||||||| || || || ||||||    
T  20386703 acagttcatgaaaagatgttccacagtttccacatcagcatgacatatagggcataaagtgtcgagagaaatacctttcctctgcagattttgcctagtt 20386802  T
Q  147 gggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattg 201  Q
    ||||| |||||||||||||||| |||||||||||| || | ||||||||| ||||    
T  20386803 gggaggatgttctttgccaagcaccacatgaagttcttcaccttgttgggaattg 20386857  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 20386960 - 20387043
Alignment:
Q  295 acagtgtagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt 378  Q
    |||||||| ||||||||||||||||| ||||| || || |||||||| || || |||||||| | ||| ||||| |||||||||    
T  20386960 acagtgtaacaaccatttttctcccaatgccaacatattttgtctttggggagagattgggagagagggatactcacaattttt 20387043  T

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