View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17851_low_5 (Length: 338)
Name: NF17851_low_5
Description: NF17851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17851_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 12844560 - 12844242
Alignment:
| Q |
15 |
ctgaaatgaaccaaagacctatagccttgtgctaaccgtagtatgctcaacatatagtgatagaaacatagccaattgccacaacnnnnnnnnnnnnnnn |
114 |
Q |
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| T |
12844560 |
ctgaaatgaaccaaagacctatagccttgtgctaaccgtagtatgctcaacatatagtgatagaaacatagccaattgccaaaa-aaaaaaaaaatgaaa |
12844462 |
T |
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| Q |
115 |
nntcatacacaattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaatnnnnnnnnctgtggaaactctgaaacgaa |
214 |
Q |
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| T |
12844461 |
aatcatagacaattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaataaaaaaa-ctgtggaaactctgaaacgaa |
12844363 |
T |
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| Q |
215 |
gaaattggttgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgtttctttcattcttctgattacagtgatagaaa |
314 |
Q |
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| T |
12844362 |
gaaattggttgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgtttctttca---ttctgattacagtgatagaaa |
12844266 |
T |
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| Q |
315 |
agaacgaacgcgccaaagaaaaga |
338 |
Q |
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| T |
12844265 |
agaacgaacgcgccaaagaaaaga |
12844242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 125 - 338
Target Start/End: Original strand, 12861065 - 12861275
Alignment:
| Q |
125 |
aattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaatnnnnnnnnctgtggaaactctgaaacgaagaaattggtt |
224 |
Q |
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| T |
12861065 |
aattaaaccccaatattaaaagtaaatgcaactttattttacattttaatataaattaaataaaaaaaactgtggaaactctgaaacgaagaaattggtt |
12861164 |
T |
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| Q |
225 |
gttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgtttctttcattcttctgattacagtgatagaaaagaacgaacg |
324 |
Q |
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| T |
12861165 |
gttacaaccgttttataaataaatcctggcgcgggaaattccaaattgctctaaccgtttctttca---ttctgattacagtgatagaaaagaacgaacg |
12861261 |
T |
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| Q |
325 |
cgccaaagaaaaga |
338 |
Q |
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| T |
12861262 |
cgacaaagaaaaga |
12861275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 12860948 - 12861000
Alignment:
| Q |
16 |
tgaaatgaaccaaagacctatagccttgtgctaaccgtagtatgctcaacata |
68 |
Q |
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| T |
12860948 |
tgaaaagaacgagagacctatagccctttgctaaccgtagtatgctcaacata |
12861000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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