View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17851_low_8 (Length: 239)

Name: NF17851_low_8
Description: NF17851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17851_low_8
NF17851_low_8
[»] chr8 (7 HSPs)
chr8 (128-219)||(12283144-12283235)
chr8 (128-219)||(12267418-12267512)
chr8 (18-86)||(12283277-12283345)
chr8 (132-215)||(12257331-12257414)
chr8 (132-215)||(12264723-12264806)
chr8 (128-215)||(12271332-12271419)
chr8 (132-208)||(12288005-12288081)
[»] chr3 (1 HSPs)
chr3 (130-208)||(29198061-29198139)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 12283235 - 12283144
Alignment:
Q  128 gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12283235 gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaat 12283144  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 12267512 - 12267418
Alignment:
Q  128 gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaac---atccattccagttaaccggccaccacaat 219  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||    
T  12267512 gttagggtaattccatcaaaagggaaaaccaatagcaacaccattagagttcttgacaccaacaatatccattccagttaaccggccaccacaat 12267418  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 12283345 - 12283277
Alignment:
Q  18 atgaaatagtacaatagtattgtatgcccccattcaaaaattgacttcatcaatctttgacaagcatgc 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12283345 atgaaatagtacaatagtattgtatgcccccattcaaaaattgactttatcaatctttgacaagcatgc 12283277  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 12257414 - 12257331
Alignment:
Q  132 gggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccacca 215  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||| ||||  |||||||||||||||||||||||| ||||||    
T  12257414 gggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccacca 12257331  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 12264806 - 12264723
Alignment:
Q  132 gggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccacca 215  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||| ||||  |||||||||||||||||||||||| ||||||    
T  12264806 gggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccacca 12264723  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 12271419 - 12271332
Alignment:
Q  128 gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccacca 215  Q
    ||||||||||||||||||||  |||| ||||||| || |||||||| |||||||   ||||||||| ||||||||||||||| |||||    
T  12271419 gttagggtaattccaccaaacaggaataccaataacagcaccattagagttcttcgtaccaacatcaattccagttaaccggtcacca 12271332  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 12288081 - 12288005
Alignment:
Q  132 gggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccg 208  Q
    ||||||||||||| ||| |||| ||||||| || | |||||| ||||||||  ||||||||| ||||||||||||||    
T  12288081 gggtaattccacctaaaaggaataccaataacacctccattagagttcttggtaccaacatcaattccagttaaccg 12288005  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 29198139 - 29198061
Alignment:
Q  130 tagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccg 208  Q
    ||||||||||||||||||  |||| ||||||| |||||| |||| ||||||||  ||||||||| ||||||||||||||    
T  29198139 tagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccg 29198061  T

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