View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_high_11 (Length: 324)
Name: NF17852_high_11
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 50267238 - 50266956
Alignment:
| Q |
11 |
agaatatagtggtaggactaggacatgtctcttaaaacccaaaagacaatttagatgatgaagtttgtgagtgagatagtggtcacaagacaaattagct |
110 |
Q |
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| T |
50267238 |
agaaaatagtggtaggactaggacatgtctcttaaaacccaaaagacaatttagatgatgaagtttgtgagtgagatagtggtcacaagacaaattagct |
50267139 |
T |
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| Q |
111 |
tagacaaatataattttggcaaagtg---agagnnnnnnnnntagtgatatgtttgttgttgtattctgaaattaagttgccccttgaagtggctagcct |
207 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50267138 |
tagacaaatataattttggcaaagtgagaagaaaaaaaaatatagtgatatgtttgttgttgtattctgaaattaagttgccccttgaagtggctagcct |
50267039 |
T |
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| Q |
208 |
ttcatttccatacacaaccaaattctagagagnnnnnnnntgaaattgagaggagtctcatgtgtgcctatgtgtgtggttaaagtgcaatgtgagagtt |
307 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50267038 |
ttcatttccatacacaaccaaattctaga------------------gagaggagtctcatgtgtgcctatgtgtgtggttaaagtgcaatgtgagagtt |
50266957 |
T |
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