View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17852_high_19 (Length: 252)
Name: NF17852_high_19
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26336083 - 26335855
Alignment:
| Q |
1 |
aatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtcatgaagaaaatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26336083 |
aatagaattggtgatatctgagagagtatagacatttttttggatgacttggttgaaggaatcaatttgggttgtcatatttggtcatgaagaaaatgta |
26335984 |
T |
|
| Q |
101 |
tcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtgaatgattggtgatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26335983 |
tcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtgaatgattggtgatc |
26335884 |
T |
|
| Q |
201 |
tcaatcccaaatactttgctgcacaacat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26335883 |
tcaatcccaaatactttgctgcacaacat |
26335855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 26323023 - 26322849
Alignment:
| Q |
44 |
atgacttggttgaaggaatcaatttgggttgtcatatttggtcatgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatact |
143 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26323023 |
atgagttggttgaaggaatcgatttgggctgtcatatttggtcctgaagtaaatgtatcaaatacacctgtgccaccatatgcaaagttcatcccatact |
26322924 |
T |
|
| Q |
144 |
tcaaatcatgttcaggcactatgttgttataccataatttgtgaatgattggtgatctcaatcccaaatactttgctgcac |
224 |
Q |
| |
|
|||||| ||||| || ||| ||||| || ||||||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
26322923 |
tcaaataatgtttagacacaatgtt------cctgaatttgtgagggattggtgatctcaatctcaaatacttggctgcac |
26322849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 226
Target Start/End: Complemental strand, 26328317 - 26328147
Alignment:
| Q |
56 |
aaggaatcaatttgggttgtcatatttggtcatgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgtt |
155 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| || |||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
26328317 |
aaggaattgatttgtgttgtcacatttggtcctgtagaagatatttcaaatacacctgtaccaccataggcaaagttcatcccatacttcaaatcatgct |
26328218 |
T |
|
| Q |
156 |
caggcactatgttgttataccataatttgtgaatgattggtgatctcaatcccaaatactttgctgcacaa |
226 |
Q |
| |
|
||||||| | || ||| |||||| |||||| ||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
26328217 |
taggcactgtattagtattccataaattgtgagtgattggtgatttcaatcccaaatacttggctgcacaa |
26328147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 42224133 - 42224184
Alignment:
| Q |
98 |
gtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaat |
149 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
42224133 |
gtatcaaacacaccagtaccaccaaatgcaaagttcattccatatttcaaat |
42224184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University