View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17852_high_2 (Length: 478)
Name: NF17852_high_2
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 241 - 460
Target Start/End: Complemental strand, 30927530 - 30927312
Alignment:
| Q |
241 |
gactcaataaatgtgtatactttgatttgactcnnnnnnnntggactcaatctaaaatatacttttaaataaatggtttaaaagtatactttcaccattt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30927530 |
gactcaataaatgtgtatactttgatttgactcaaaaaaa-tggactcaatctaaaatagacttttaaataaatggtttaaaagtatactttcaccattt |
30927432 |
T |
|
| Q |
341 |
tttgtaaaaataaattttatattattaggaaatagaaaatatgtgtaatattgattacaggaaatcatatagagtttttagctcctttttagaatcatat |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30927431 |
tttgtaaaaataaattttatattattaggaaatagaaaatatatgtaatatttattacaggaaatcatatagagtttttagctcctttttagaatcatat |
30927332 |
T |
|
| Q |
441 |
tagagttaaagtagctagtt |
460 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30927331 |
tagagttaaagtagctagtt |
30927312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 30920704 - 30920534
Alignment:
| Q |
9 |
acatcatcattattacggtgatacctttcttcatctcagtgactgccatagctcttttcaacgtttatatatcttcgagaatgaaatttatgaagatttc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30920704 |
acatcatcattattacggtgatacctttcttcatctcagtgactgccatagctcttttcaacgtttatatatcttcgagaatgaaatttatgaaaatttc |
30920605 |
T |
|
| Q |
109 |
tatgtttcaagttttacaccnnnnnnntattgtcacatgaccttatttatagtcataaggtagtaaatgac |
179 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30920604 |
tatgtttcaagttttacaacaaaaaaatattgtcacatgaccttatttatagtcataagttagtaaatgac |
30920534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 30927762 - 30927592
Alignment:
| Q |
9 |
acatcatcattattacggtgatacctttcttcatctcagtgactgccatagctcttttcaacgtttatatatcttcgagaatgaaatttatgaagatttc |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30927762 |
acatcatcattattatggtgatacctttcttcatctcagtgactgccatagctcttttcaacgtttatatatcttcgagaatgaaatttatgaagatttc |
30927663 |
T |
|
| Q |
109 |
tatgtttcaagttttacaccnnnnnnntattgtcacatgaccttatttatagtcataaggtagtaaatgac |
179 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30927662 |
tatgtttcaaggtttacaccgaaaaaatattttcacatgaccttatttatagtcataaggtagtaaatgac |
30927592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 304 - 460
Target Start/End: Complemental strand, 30919779 - 30919627
Alignment:
| Q |
304 |
tttaaataaatggtttaaaagtatactttcaccat--tttttgtaaaaataaa-ttttatattattaggaaatagaaaatatgtgtaatattgattacag |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||| ||||||||||| |||||||||||| ||| |
|
|
| T |
30919779 |
tttaaataaatggtttaaaagtatagtttcaccatattttttgtaaaattaaaattttatatta-------atagaaaatatatgtaatattgatcacat |
30919687 |
T |
|
| Q |
401 |
gaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtagctagtt |
460 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
30919686 |
gaaatcatatagggtttttagctcctttttagtatcattttagagttaaagtagctagtt |
30919627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 7784961 - 7784900
Alignment:
| Q |
396 |
tacaggaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtagcta |
457 |
Q |
| |
|
|||| ||||| |||||| ||||||| |||||||||||| |||||||||||||||||| |||| |
|
|
| T |
7784961 |
tacatgaaattatatagggtttttaactcctttttagagtcatattagagttaaagtggcta |
7784900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 7784253 - 7784199
Alignment:
| Q |
406 |
catatagagtttttagctcctttttagaatcatattagagttaaagtagctagtt |
460 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
7784253 |
catatagggtttttaactcctttttagagtcatattatagttaaagtggctagtt |
7784199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 11602303 - 11602375
Alignment:
| Q |
388 |
atattgattacaggaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtagctagtt |
460 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||||||||| |||| | || |||||||||||||||| |||| |
|
|
| T |
11602303 |
atattgattacatgaaatcatatagggcttttagctcctttgtagagttattttagagttaaagtagcgagtt |
11602375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 17117210 - 17117265
Alignment:
| Q |
399 |
aggaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtag |
454 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||| || ||||||||||||||| |
|
|
| T |
17117210 |
aggaaatcatatagagtttttagtccatttttaaaattattttagagttaaagtag |
17117265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 3389385 - 3389417
Alignment:
| Q |
241 |
gactcaataaatgtgtatactttgatttgactc |
273 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
3389385 |
gactcaataaatgtgtatagtttgatttgactc |
3389417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University