View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_high_25 (Length: 239)
Name: NF17852_high_25
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_high_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 6863406 - 6863185
Alignment:
| Q |
18 |
caaacgtatgtataacttgccatgcctctctatagacatgtttctatgctcttagacataactaaaacactccataaacttgatttgcttatttcataac |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6863406 |
caaacgtatgtacaacttgccatgcctctctatagacatgtttctatgctcttagacatagctaaaacactccataaacttgatttgcttatttcataac |
6863307 |
T |
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| Q |
118 |
catttcaatgaagtttagccttttgtcaaggctttatggcttatagaaatcatttaactgaaatagtatttagtttctaattcataaagaccttataagt |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6863306 |
catttcaatgaagtttagctttttgtcaaggctttatggcttatagaaatcatttaactgaaatagtatttagtttctaattcataaagaccttataagt |
6863207 |
T |
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| Q |
218 |
ttaggctttgtctaacatgcac |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
6863206 |
ttaggctttgtctaacatgcac |
6863185 |
T |
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