View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_high_3 (Length: 462)
Name: NF17852_high_3
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 45970593 - 45970167
Alignment:
| Q |
18 |
actagtagtatctcaaaataattttgtaaataatgaacattcaggacaatctgtcttttgattgtgctttatacttcacatatgatatagtttgtttcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| |
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| T |
45970593 |
actagtagtatctcaaaataattttgtaaataatgaacattcaggacaatctgtctttcgattgtgctttatacttcacatat-----agtttgcttcat |
45970499 |
T |
|
| Q |
118 |
gaaatgggagcatcatttaggggcgaccagcataggtaccattggtcaggatgttaataccgtgaac-ttattaaggaagaaatcactgttaccaaactc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| |
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| T |
45970498 |
gaaatgggagcatcatttaggggcgaccagcataggtaccattggtcaggatgttaataccgtgaaccttattaaggaagaaataactgtaaccaaactc |
45970399 |
T |
|
| Q |
217 |
ttatcaatagcgctacattaaaattatgttacgcgacatgctatttaggttcacagtgaatattgttcctgctattgcggcgctactgtgaaccttattc |
316 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45970398 |
ttatcaatagtgctacattaaaattatgttacgcggcatgctatttaggttcacagtgaatattgttcctgctattgcggcgctactgtgaaccttattc |
45970299 |
T |
|
| Q |
317 |
gagttttttactaaatagtgtatcacggaaaaagagcaatatgttctaattctcttaacgctttagtactgtaatgctgctataacagccgtttgacaac |
416 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45970298 |
gagttttttactaaatagtgtttcacggaaaaagagcaatatgttctaattctcttaacgctttagtactgtaatgctgctataacagccgtttgacaac |
45970199 |
T |
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| Q |
417 |
actgggagaaatgaaccaaataatgccaacat |
448 |
Q |
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| T |
45970198 |
actgggagaaatgaaccaaataatgccaacat |
45970167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 117 - 446
Target Start/End: Complemental strand, 45975035 - 45974704
Alignment:
| Q |
117 |
tgaaatgggagcatcatttaggggcgaccagcataggtaccattggtcaggatgttaataccgtgaac-ttattaaggaagaaatcactgttaccaaact |
215 |
Q |
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||||| ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||| |
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| T |
45975035 |
tgaaaggggagcaacatttaggggcgaccagcataggtgccataggtcaggatgttaataccgtgaaccttattaagggagaaaccactgttatcaaacg |
45974936 |
T |
|
| Q |
216 |
cttatcaatagcgctacattaaaattatgttacgcgacatgctatttaggttcacagtgaatattgttcctgctattgcggcgctactgtgaaccttatt |
315 |
Q |
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| T |
45974935 |
ctgaacaatagtgctatgttaaaattctgttacgcgacatgctatttaggttcacattgaacctttttcctgctacaggggcgctactatgaatcttatt |
45974836 |
T |
|
| Q |
316 |
cg----agttttttactaaatagtgtatcacggaaaaagagcaatatgttctaattctcttaacgctttagtactgtaatgctgctataacagccgtttg |
411 |
Q |
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| T |
45974835 |
tgacaaagttttttacaaaatagcgtatcacggaaaaagagcaatatgttcaaattctctt-atgctataagac--taacgctgctatagcagttgtttg |
45974739 |
T |
|
| Q |
412 |
acaacactgggagaaatgaaccaaataatgccaac |
446 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||| |
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| T |
45974738 |
acaacactcggagaaatgaaccaaatgatgccaac |
45974704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 45975154 - 45975077
Alignment:
| Q |
23 |
tagtatctcaaaataattttgtaaataatgaacattcaggacaatctgtcttttgattgtgctttatacttcacatat |
100 |
Q |
| |
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||||| ||||||||| |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45975154 |
tagtacctcaaaatatttttgtaaatcatgaaccttcaggacagtctgtcttttgattgtgctttatacttcacatat |
45975077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 45981353 - 45981282
Alignment:
| Q |
23 |
tagtatctcaaaataattttgtaaataatgaacattcaggacaatctgtcttttgattgtgctttatacttc |
94 |
Q |
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|||||||||| |||| ||| | |||||||| |||||||||| | || |||||||||||||| |||||||||| |
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| T |
45981353 |
tagtatctcataatattttagcaaataatggacattcaggatagtccgtcttttgattgtgttttatacttc |
45981282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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