View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_high_6 (Length: 364)
Name: NF17852_high_6
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 154 - 331
Target Start/End: Original strand, 42853761 - 42853938
Alignment:
| Q |
154 |
ttattaattttccctcctaaatacactaccaacttttggaaaattcaataaacaattatgtgtgctggttccacgaacacaagtattttacctgactttg |
253 |
Q |
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| T |
42853761 |
ttattaattttccatcctaaatatactaccaacttttggaaaattcaataaacaattatgtgtgctggttccacgaacacaagtattttacctgactttg |
42853860 |
T |
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| Q |
254 |
accgcaaactccatgtatataggacaggacgcgcataacgtcagtagtgggaaagcatatttataaagtttaaattaa |
331 |
Q |
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| T |
42853861 |
accgcaaactccatgtatataggacaggacgcgcataacgtcagtagtgggaaagcatatttttaaagtttaaattaa |
42853938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 42853431 - 42853575
Alignment:
| Q |
18 |
tactcaaaaccttatattaaagttatgtattccctcactaatattttgttcaacttgaaattttatattcaatgtacaattttaaccaacactttacaca |
117 |
Q |
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| T |
42853431 |
tactcaaaactttatattaaagttatgtattctttcactaatattttgttcaacttgaaattttctattcaatgtacaattttaaccgacactttacaca |
42853530 |
T |
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| Q |
118 |
tcacaaaatctcatcaaaacaatttcattttaatcattattaatt |
162 |
Q |
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| T |
42853531 |
tcacaaaatctcatcaaaacaatttcattttaatcattattaatt |
42853575 |
T |
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