View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_high_7 (Length: 348)
Name: NF17852_high_7
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 24 - 330
Target Start/End: Complemental strand, 39553818 - 39553512
Alignment:
| Q |
24 |
gaacctgaatctgatattaaaaccgacccgataataagtcgcatatactatgtaacaagcaaggaactcaacaaaatgcagtcactagccaactcaaaca |
123 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
39553818 |
gaacctgaatctgatattaaaaccgacccaataataagtcgcatatactatgtaacaagcaaagaactcaacaacatgcagtcactagccaactcaaaca |
39553719 |
T |
|
| Q |
124 |
ataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553718 |
ataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgt |
39553619 |
T |
|
| Q |
224 |
tgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553618 |
tgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcg |
39553519 |
T |
|
| Q |
324 |
attccct |
330 |
Q |
| |
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||||||| |
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| T |
39553518 |
attccct |
39553512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 29 - 330
Target Start/End: Complemental strand, 39543794 - 39543493
Alignment:
| Q |
29 |
tgaatctgatattaaaaccgacccgataataagtcgcatatactatgtaacaagcaaggaactcaacaaaatgcagtcactagccaactcaaacaataat |
128 |
Q |
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|||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
39543794 |
tgaatctgatcaaaaaactgacccaataataagtcgcatatattatgtaacaagcaaagaactcaacaacatgcagtcacttgccaactcaaacaataat |
39543695 |
T |
|
| Q |
129 |
ggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaa |
228 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543694 |
ggtggtagttccaaacgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaa |
39543595 |
T |
|
| Q |
229 |
aaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattcc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543594 |
aaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattcc |
39543495 |
T |
|
| Q |
329 |
ct |
330 |
Q |
| |
|
|| |
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|
| T |
39543494 |
ct |
39543493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 36 - 322
Target Start/End: Complemental strand, 39586910 - 39586627
Alignment:
| Q |
36 |
gatattaaaaccgacccgataataagtcgcatatactatgtaacaagcaaggaactcaacaaaatgcagtcactagccaactcaaacaataatggtggta |
135 |
Q |
| |
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|||||||||||| |||| ||||||||||||| ||||| ||||||||| | |||||||||| ||||||| |||||||||| |||| |||| |||| | |
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| T |
39586910 |
gatattaaaaccaacccactaataagtcgcatgtactacgtaacaagcgaagaactcaacaccatgcagttactagccaacacaaataata---gtggaa |
39586814 |
T |
|
| Q |
136 |
gttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggg |
235 |
Q |
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| |||||||||||||| || || ||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||| |||||||||||||||| |
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| T |
39586813 |
gcgttaagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggg |
39586714 |
T |
|
| Q |
236 |
gcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttc |
322 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| |
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| T |
39586713 |
gattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttc |
39586627 |
T |
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