View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17852_high_9 (Length: 335)

Name: NF17852_high_9
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17852_high_9
NF17852_high_9
[»] chr1 (23 HSPs)
chr1 (16-293)||(6487647-6487925)
chr1 (99-184)||(526996-527081)
chr1 (101-184)||(26040972-26041055)
chr1 (99-184)||(39858347-39858432)
chr1 (99-184)||(46845753-46845838)
chr1 (96-157)||(1673366-1673427)
chr1 (97-170)||(1994951-1995024)
chr1 (97-157)||(27325752-27325812)
chr1 (98-182)||(44797565-44797649)
chr1 (103-180)||(29637311-29637388)
chr1 (99-172)||(49430573-49430646)
chr1 (99-157)||(2403049-2403107)
chr1 (102-184)||(15225088-15225170)
chr1 (98-180)||(32267566-32267648)
chr1 (130-184)||(40314123-40314177)
chr1 (99-180)||(40294832-40294913)
chr1 (100-184)||(13276561-13276645)
chr1 (101-179)||(7178213-7178291)
chr1 (125-155)||(34311347-34311377)
chr1 (133-178)||(19989273-19989318)
chr1 (125-181)||(29731214-29731270)
chr1 (99-151)||(40030838-40030890)
chr1 (125-181)||(48489475-48489531)
[»] chr4 (21 HSPs)
chr4 (97-184)||(5817477-5817564)
chr4 (102-184)||(51579323-51579405)
chr4 (97-184)||(20107108-20107196)
chr4 (99-182)||(37605790-37605873)
chr4 (99-182)||(55281208-55281291)
chr4 (97-171)||(17044001-17044075)
chr4 (99-184)||(25784005-25784090)
chr4 (100-171)||(25164581-25164652)
chr4 (99-170)||(32525133-32525204)
chr4 (98-184)||(24059230-24059316)
chr4 (99-181)||(43749092-43749174)
chr4 (99-157)||(45996018-45996076)
chr4 (99-184)||(42179234-42179319)
chr4 (99-184)||(50498210-50498295)
chr4 (101-169)||(48525328-48525396)
chr4 (94-145)||(39631274-39631325)
chr4 (96-182)||(22364560-22364646)
chr4 (98-172)||(51579580-51579653)
chr4 (100-164)||(32290215-32290279)
chr4 (104-184)||(41277220-41277300)
chr4 (103-172)||(36851231-36851300)
[»] chr8 (18 HSPs)
chr8 (107-183)||(8368469-8368545)
chr8 (96-184)||(45413635-45413723)
chr8 (95-184)||(28897991-28898080)
chr8 (100-182)||(43066003-43066085)
chr8 (99-184)||(2599531-2599616)
chr8 (104-184)||(41075694-41075774)
chr8 (100-178)||(27497174-27497251)
chr8 (98-171)||(1993750-1993823)
chr8 (99-184)||(10391402-10391487)
chr8 (101-181)||(11904855-11904935)
chr8 (104-184)||(31774729-31774809)
chr8 (99-157)||(14342313-14342371)
chr8 (127-179)||(16465714-16465766)
chr8 (193-231)||(5749069-5749107)
chr8 (125-179)||(45502688-45502742)
chr8 (99-156)||(4077086-4077143)
chr8 (101-165)||(12142083-12142147)
chr8 (100-176)||(44081068-44081144)
[»] chr3 (14 HSPs)
chr3 (100-184)||(23004757-23004841)
chr3 (99-183)||(8330690-8330774)
chr3 (99-182)||(50989203-50989286)
chr3 (99-182)||(51092335-51092418)
chr3 (103-180)||(33288136-33288213)
chr3 (102-171)||(38247801-38247870)
chr3 (94-181)||(9271105-9271192)
chr3 (100-182)||(12224102-12224184)
chr3 (107-172)||(54713532-54713597)
chr3 (99-150)||(29915090-29915141)
chr3 (99-150)||(29964243-29964294)
chr3 (96-182)||(48034908-48034994)
chr3 (98-170)||(8496705-8496777)
chr3 (97-153)||(44092518-44092574)
[»] chr6 (8 HSPs)
chr6 (105-182)||(29429590-29429667)
chr6 (96-171)||(14314096-14314171)
chr6 (99-184)||(23915972-23916057)
chr6 (102-182)||(1244655-1244735)
chr6 (99-157)||(9045833-9045891)
chr6 (99-151)||(34792781-34792833)
chr6 (97-155)||(9521943-9522001)
chr6 (105-178)||(12748217-12748290)
[»] chr2 (15 HSPs)
chr2 (99-172)||(4434699-4434772)
chr2 (99-181)||(32599348-32599430)
chr2 (99-184)||(3121610-3121695)
chr2 (100-171)||(13697075-13697146)
chr2 (98-169)||(14945848-14945919)
chr2 (102-184)||(36272758-36272840)
chr2 (99-184)||(33299979-33300064)
chr2 (97-184)||(5562934-5563021)
chr2 (100-182)||(42061330-42061412)
chr2 (99-184)||(24475798-24475883)
chr2 (98-170)||(40095262-40095334)
chr2 (99-157)||(14242639-14242697)
chr2 (128-169)||(25333173-25333214)
chr2 (99-143)||(23860302-23860346)
chr2 (133-181)||(40216443-40216491)
[»] chr5 (8 HSPs)
chr5 (99-182)||(13988247-13988330)
chr5 (99-182)||(36890377-36890460)
chr5 (99-184)||(15285329-15285414)
chr5 (125-181)||(12248299-12248355)
chr5 (98-157)||(11247191-11247250)
chr5 (102-172)||(1447856-1447926)
chr5 (193-231)||(20151478-20151516)
chr5 (101-179)||(43100310-43100388)
[»] chr7 (12 HSPs)
chr7 (97-184)||(31741041-31741128)
chr7 (98-157)||(46576366-46576425)
chr7 (98-171)||(48460658-48460731)
chr7 (128-180)||(43359001-43359053)
chr7 (97-184)||(38754992-38755079)
chr7 (101-184)||(42974475-42974558)
chr7 (106-184)||(11752604-11752682)
chr7 (101-181)||(28713679-28713759)
chr7 (101-181)||(38349559-38349639)
chr7 (193-231)||(38754937-38754975)
chr7 (198-243)||(33496608-33496653)
chr7 (99-172)||(47480122-47480194)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 6487647 - 6487925
Alignment:
Q  16 catcatcatattgtatgacacgttcatttaaaatacggcacatcatcatttttgttctttgtnnnnnnnntctattgcttaatgagtagtgatacataga 115  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||          ||||||||||||||||||||||||||||    
T  6487647 catcatcagattgt-tgacacgttcatttaaaatacgacacatcatcatttatgttcttcgtaaaaaaaca-tattgcttaatgagtagtgatacataga 6487744  T
Q  116 ctaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccacnnnnnnnta--ttttttgtctctcacacacg 213  Q
    | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||  ||||||||||||||||||||    
T  6487745 ccaatttaggtggcatgtaccacttgtacatccacacacaattgtgacatgtgtccacgtggtccccacaaaaaaataatttttttgtctctcacacacg 6487844  T
Q  214 ctcacatgggg--tggtatattgtgtatatggnnnnnnngagtgtcaatgaaacattagccttgtttgaatgatgagtgtat 293  Q
    |||| ||||||  |||||||||||||||||||       |||||||| |||||||||| |||||||||| ||||||||||||    
T  6487845 ctcatatgggggatggtatattgtgtatatgg-aaaaaagagtgtcagtgaaacattatccttgtttgattgatgagtgtat 6487925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 527081 - 526996
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||| |  ||| |||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  527081 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 526996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 26040972 - 26041055
Alignment:
Q  101 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||| | || |  ||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  26040972 gtagtgatacacaaaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccacgtggtccccac 26041055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 39858347 - 39858432
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||| |  ||| ||||||| |||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  39858347 gagtagtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 39858432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 46845838 - 46845753
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||| |  |||  ||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  46845838 gagtagtgatacatagaccaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 46845753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 1673366 - 1673427
Alignment:
Q  96 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 157  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  1673366 aatgagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaat 1673427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 1994951 - 1995024
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtc 170  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| |||||    
T  1994951 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtc 1995024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 27325812 - 27325752
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 157  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  27325812 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 27325752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 44797649 - 44797565
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||| | ||||||  |||||||||    
T  44797649 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgataagtgtccttgtggtcccc 44797565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 29637388 - 29637311
Alignment:
Q  103 agtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 180  Q
    |||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||    
T  29637388 agtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcc 29637311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 49430646 - 49430573
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 172  Q
    |||| ||||||||||||| |  ||| |||||||||||||||| |||||| | ||||||| ||||||||||||||    
T  49430646 gagtggtgatacatagaccaccttaggtggcatgtaccacttatacatcaatacacaattgtgacatgtgtcca 49430573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 2403107 - 2403049
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 157  Q
    |||||||||||||||||| |  |||  |||||||||||||||||||| |||||||||||    
T  2403107 gagtagtgatacatagaccatcttagatggcatgtaccacttgtacacccacacacaat 2403049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 15225170 - 15225088
Alignment:
Q  102 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||||| |  ||| ||||||||||| |||| |||| |||||  |||| ||||||| ||||||| ||||||||||    
T  15225170 tagtgatacatagaccaccttaggtggcatgtacaacttatacacccacatgcaattgtgacatatgtccacatggtccccac 15225088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 32267648 - 32267566
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 180  Q
    ||||||||||||||||||| |  ||| ||||||||||| | ||||||| |||||||||||  ||||| ||||||  |||||||    
T  32267648 tgagtagtgatacatagaccatcttaagtggcatgtacaatttgtacacccacacacaattttgacaagtgtccttgtggtcc 32267566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 40314123 - 40314177
Alignment:
Q  130 atgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||| || |||||||| ||||||| |||||||||||||| |||||||||||    
T  40314123 atgtaccatttatacatccatacacaattgtgacatgtgtccatgtggtccccac 40314177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 40294913 - 40294832
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 180  Q
    |||||||||||||||||| | |||| |||||| ||||||||||| || | | ||||||| ||||||||| || | |||||||    
T  40294913 gagtagtgatacatagaccactttaggtggcacgtaccacttgtccacctatacacaattgtgacatgtatctatgtggtcc 40294832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 13276645 - 13276561
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||||||| |  ||| |||| ||||||||||| ||||  || |||||||  ||||||||||||| ||||| |||||    
T  13276645 agtagtgatacatagaccaccttaggtggtatgtaccacttatacactcatacacaattatgacatgtgtccatgtggtacccac 13276561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 7178291 - 7178213
Alignment:
Q  101 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtc 179  Q
    |||||||||||||||| |  ||| ||| ||||||||| ||||||| ||||| ||||| |||||| ||||| | ||||||    
T  7178291 gtagtgatacatagaccaccttaggtgacatgtaccatttgtacacccacatacaattgtgacaagtgtctatgtggtc 7178213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 34311377 - 34311347
Alignment:
Q  125 gtggcatgtaccacttgtacatccacacaca 155  Q
    |||||||||||||||||||||||||||||||    
T  34311377 gtggcatgtaccacttgtacatccacacaca 34311347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 19989273 - 19989318
Alignment:
Q  133 taccacttgtacatccacacacaatggtgacatgtgtccacgtggt 178  Q
    ||||||||||||||||||| ||||  |||||||||||||| |||||    
T  19989273 taccacttgtacatccacatacaagtgtgacatgtgtccatgtggt 19989318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 29731214 - 29731270
Alignment:
Q  125 gtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    ||||||| ||||||| ||||| ||||| | ||| |||||||||||||| ||||||||    
T  29731214 gtggcatataccactagtacacccacatataattgtgacatgtgtccatgtggtccc 29731270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 40030838 - 40030890
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccaca 151  Q
    |||||||||||||||||| |  ||| || |||||||||||||||||| |||||    
T  40030838 gagtagtgatacatagaccaccttaggtagcatgtaccacttgtacacccaca 40030890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 48489475 - 48489531
Alignment:
Q  125 gtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    ||||||| ||||||||||||||||| | | ||| ||||||| |||||| ||||||||    
T  48489475 gtggcatataccacttgtacatccatatataattgtgacatctgtccatgtggtccc 48489531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 5817564 - 5817477
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  5817564 atgagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccatgtggtccccac 5817477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 51579323 - 51579405
Alignment:
Q  102 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||||| |  ||| ||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||    
T  51579323 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccatgtggttcccac 51579405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 20107108 - 20107196
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtaca-tccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||||| |  ||| |||||||||||||||||||||  || |||||||| |||||||||||||| ||||| |||||    
T  20107108 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacaccccgcacacaattgtgacatgtgtccatgtggttcccac 20107196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 37605873 - 37605790
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  37605873 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 37605790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 55281208 - 55281291
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  55281208 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 55281291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 17044001 - 17044075
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 171  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  17044001 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 17044075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 25784090 - 25784005
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||  |  ||| ||||||||||||||||||||||||||||| ||| ||||||||| | || || ||||||||    
T  25784090 gagtagtgatacatagatcatcttaggtggcatgtaccacttgtacatccacacataattgtgacatgtattcatgtagtccccac 25784005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 25164652 - 25164581
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 171  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  25164652 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 25164581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 32525204 - 32525133
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtc 170  Q
    |||||||||||||||||| |  ||| ||||||| |||||||| |||||||||||||||| |||| |||||||    
T  32525204 gagtagtgatacatagaccatcttaggtggcatataccacttatacatccacacacaattgtgatatgtgtc 32525133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 24059316 - 24059230
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||||||||| |  |||  ||||||||| || ||||||| ||||| ||||| |||||||||||||| ||||| |||||    
T  24059316 tgagtagtgatacatagaccaccttagatggcatgtatcatttgtacacccacatacaattgtgacatgtgtccatgtggttcccac 24059230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 43749092 - 43749174
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||| |||  ||||| ||||||  ||||||||    
T  43749092 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacataattttgacaagtgtccttgtggtccc 43749174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 45996076 - 45996018
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 157  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  45996076 gagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaat 45996018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 42179319 - 42179234
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||| |||||||||||| |  ||| |||| ||||||||||| |||| |||  |||||| |||||||||||||| |||||||||||    
T  42179319 gagtaatgatacatagaccaccttaggtggtatgtaccacttatacacccatgcacaattgtgacatgtgtccatgtggtccccac 42179234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 50498210 - 50498295
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||  |  ||| || | ||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  50498210 gagtagtgatacatagatcaccttaggtagtatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 50498295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 48525328 - 48525396
Alignment:
Q  101 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgt 169  Q
    ||||||||||||| || | |||| ||||||| ||||||||||||||||||| | ||| |||||||||||    
T  48525328 gtagtgatacataaaccactttaggtggcatataccacttgtacatccacatataattgtgacatgtgt 48525396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 39631325 - 39631274
Alignment:
Q  94 ttaatgagtagtgatacatagactaatttatgtggcatgtaccacttgtaca 145  Q
    ||||||||||||||||||||||| |  ||| |||||||||||||||||||||    
T  39631325 ttaatgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 39631274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 22364646 - 22364560
Alignment:
Q  96 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    |||||||||||||||||| |  || ||| ||||||| |||||||| |||| ||| | ||||| |||| ||||||||| |||||||||    
T  22364646 aatgagtagtgatacataaatcaacttaggtggcatataccacttatacacccatatacaattgtgatatgtgtccatgtggtcccc 22364560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 51579580 - 51579653
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 172  Q
    |||||||||||||| |||| |  ||| ||||||||||||||||||||| ||| | ||||| ||||||||||||||    
T  51579580 tgagtagtgataca-agaccaccttaggtggcatgtaccacttgtacacccaaatacaattgtgacatgtgtcca 51579653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 32290215 - 32290279
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgaca 164  Q
    ||||||||||||||||| |  ||| |||||||||||||||| |||| ||| ||||||| ||||||    
T  32290215 agtagtgatacatagaccatcttaggtggcatgtaccacttatacacccatacacaattgtgaca 32290279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 41277220 - 41277300
Alignment:
Q  104 gtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||  |  ||| ||| |||||||||| |||||| ||||| ||||| ||||||||||| || |||||||||||    
T  41277220 gtgatacatagatcaccttaggtgacatgtaccacctgtacacccacatacaattgtgacatgtgttcatgtggtccccac 41277300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 36851231 - 36851300
Alignment:
Q  103 agtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 172  Q
    |||||| ||||||| |  ||| ||||||||||||||||||||| |||| ||  || ||||||||||||||    
T  36851231 agtgatgcatagaccaccttaagtggcatgtaccacttgtacacccacgcatgattgtgacatgtgtcca 36851300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 8368545 - 8368469
Alignment:
Q  107 atacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccca 183  Q
    |||||||||| |  ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  8368545 atacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccacgtggtcccca 8368469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 45413723 - 45413635
Alignment:
Q  96 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||||||||||| |  ||| |||||||||||||||| |||||||| ||||||| ||||||||||||||  ||||||||||    
T  45413723 aatgagtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatatggtccccac 45413635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 28897991 - 28898080
Alignment:
Q  95 taatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||||||| |  ||| ||||||| |||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  28897991 taatgagtagtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 28898080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 43066085 - 43066003
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    ||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||  ||||| ||||||  |||||||||    
T  43066085 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacacaattttgacaagtgtccttgtggtcccc 43066003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 2599531 - 2599616
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||| |  ||| |||||||||||||||| |||| ||| ||||||| ||||||||||| || |||||||||||    
T  2599531 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgttcatgtggtccccac 2599616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 41075774 - 41075694
Alignment:
Q  104 gtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||| |  ||| ||| ||||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||    
T  41075774 gtgatacatagaccaccttaggtgacatgtaccacttgtacacccacatacaattgtgacatgtgttcatgtggtccccac 41075694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 27497174 - 27497251
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggt 178  Q
    |||||||||||| |||| | |||| ||||||||||||||||||||||||||| ||||| | ||||||||| || |||||    
T  27497174 agtagtgataca-agaccactttaggtggcatgtaccacttgtacatccacagacaattgcgacatgtgttcatgtggt 27497251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 1993823 - 1993750
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 171  Q
    ||||||||||||||||||| |  ||| |||||||||| |||||||||| |||||||||||  ||||| ||||||    
T  1993823 tgagtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaattttgacaagtgtcc 1993750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 10391487 - 10391402
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||| |||||||||||  |  ||| ||||||||| |||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  10391487 gagtaatgatacatagatcatcttaggtggcatgtgccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 10391402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 11904855 - 11904935
Alignment:
Q  101 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    ||||||||||||| || |  ||| ||||||| ||||||||||||| ||||| | ||| |||||||||||||| ||||||||    
T  11904855 gtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtggtccc 11904935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 31774729 - 31774809
Alignment:
Q  104 gtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||| |  ||| ||| |||||||||||||||||  |||| ||||| ||||||||||| || |||||||||||    
T  31774729 gtgatacatagaccaccttaggtgacatgtaccacttgtacactcacatacaattgtgacatgtgttcatgtggtccccac 31774809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 14342371 - 14342313
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 157  Q
    |||||||||||||||||| |  ||| |||||||||||||||| |||| |||||||||||    
T  14342371 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaat 14342313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 16465766 - 16465714
Alignment:
Q  127 ggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtc 179  Q
    ||||||||||||||||| | ||||| ||||| |||||||||||| ||||||||    
T  16465766 ggcatgtaccacttgtatacccacatacaattgtgacatgtgtctacgtggtc 16465714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 5749107 - 5749069
Alignment:
Q  193 attttttgtctctcacacacgctcacatggggtggtata 231  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  5749107 atttattgtctctcacacactctcacatggggtggtata 5749069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 45502688 - 45502742
Alignment:
Q  125 gtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtc 179  Q
    |||| ||||||||||||||||| || | ||||| |||||||||||||| ||||||    
T  45502688 gtggtatgtaccacttgtacattcatatacaattgtgacatgtgtccatgtggtc 45502742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 4077143 - 4077086
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaa 156  Q
    ||||||||||| |||||| |  ||| ||||||||||||||||||| | ||||||||||    
T  4077143 gagtagtgatatatagaccaccttaggtggcatgtaccacttgtatacccacacacaa 4077086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 12142083 - 12142147
Alignment:
Q  101 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacat 165  Q
    ||||||||||||| || |  ||| ||||||| ||||||||||||||||||| | ||| |||||||    
T  12142083 gtagtgatacataaaccaccttaggtggcatataccacttgtacatccacatataattgtgacat 12142147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 44081068 - 44081144
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtg 176  Q
    |||||||||||||| || |  |||  ||||||||| || ||||||||||||||  ||| |||||||||| |||||||    
T  44081068 agtagtgatacatacaccaccttagatggcatgtatcatttgtacatccacacgtaattgtgacatgtgcccacgtg 44081144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 23004757 - 23004841
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||||||| ||||||||| | || |||||||||||    
T  23004757 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtattcatgtggtccccac 23004841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 8330774 - 8330690
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccca 183  Q
    |||||||||||||||||| |  |||  ||||||||||||||||||||| |||||||||| |||| || |||||| ||||||||||    
T  8330774 gagtagtgatacatagaccaccttagatggcatgtaccacttgtacattcacacacaattgtgatatatgtccatgtggtcccca 8330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 50989203 - 50989286
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  50989203 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 50989286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 51092335 - 51092418
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  51092335 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 51092418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 33288136 - 33288213
Alignment:
Q  103 agtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 180  Q
    |||||||||||||| |  ||| |||| |||||||||||||||| ||||||||||| |||| ||||||| | |||||||    
T  33288136 agtgatacatagaccaccttaggtggtatgtaccacttgtacacccacacacaattgtgatatgtgtctatgtggtcc 33288213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 38247801 - 38247870
Alignment:
Q  102 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 171  Q
    ||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  38247801 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 38247870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 9271105 - 9271192
Alignment:
Q  94 ttaatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    |||| |||||||||||||||||| |  |||  |||||||||||||||||||| ||||||| |||  ||||| ||||||  ||||||||    
T  9271105 ttaaagagtagtgatacatagaccaccttagatggcatgtaccacttgtacacccacacataattttgacaagtgtccttgtggtccc 9271192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 12224184 - 12224102
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    |||||||||||||| || |  ||| ||||||||||||| ||||||| |||||||||||  ||||| ||||||  |||||||||    
T  12224184 agtagtgatacataaaccaccttaggtggcatgtaccatttgtacacccacacacaattttgacaagtgtccttgtggtcccc 12224102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 54713532 - 54713597
Alignment:
Q  107 atacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 172  Q
    |||||||||| |  ||| ||||||||||||||||| ||||||||||| |||  |||||||||||||    
T  54713532 atacatagaccacgttaggtggcatgtaccacttgaacatccacacataattatgacatgtgtcca 54713597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 29915141 - 29915090
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccac 150  Q
    |||||||||||||||||| |  ||||||||||| ||||||||||||| ||||    
T  29915141 gagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29915090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 29964294 - 29964243
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccac 150  Q
    |||||||||||||||||| |  ||||||||||| ||||||||||||| ||||    
T  29964294 gagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29964243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 48034994 - 48034908
Alignment:
Q  96 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    ||||||| |||||||||| || |  ||| ||| ||||||||||||||||| ||||| |||||  ||||| ||||||  |||||||||    
T  48034994 aatgagtggtgatacataaaccaccttaggtgacatgtaccacttgtacacccacatacaattttgacaagtgtccttgtggtcccc 48034908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 8496705 - 8496777
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtc 170  Q
    |||||| |||||||||||| |  ||| |||||||||||||||||| || ||||| |||||  ||||| |||||    
T  8496705 tgagtattgatacatagaccaccttaggtggcatgtaccacttgtccacccacatacaattttgacaagtgtc 8496777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 44092574 - 44092518
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacaca 153  Q
    ||||||| |||||||| ||  | |||| ||||||||| |||||||||||||||||||    
T  44092574 atgagtaatgatacattgatcactttaggtggcatgtgccacttgtacatccacaca 44092518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 29429590 - 29429667
Alignment:
Q  105 tgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    ||||||| ||||||  ||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||    
T  29429590 tgatacacagactaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccacatggtcccc 29429667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 14314171 - 14314096
Alignment:
Q  96 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 171  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  14314171 aatgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 14314096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 23915972 - 23916057
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||  |  |||  ||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||    
T  23915972 gagtagtgatacatagatcaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccccac 23916057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 1244735 - 1244655
Alignment:
Q  102 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    ||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||  || || ||||||  |||||||||    
T  1244735 tagtgatacatagaccaccttaagtggcatgtaccacttgtacatccacacacaattttggcaagtgtccttgtggtcccc 1244655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 9045833 - 9045891
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 157  Q
    |||||||||||||||||| |  ||| |||||||||| |||||||||| |||||||||||    
T  9045833 gagtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaat 9045891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 34792833 - 34792781
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccaca 151  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||    
T  34792833 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 34792781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 9522001 - 9521943
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacaca 155  Q
    ||||||||| |||||||||  |  ||| ||||||||||||||||||||| |||||||||    
T  9522001 atgagtagtaatacatagatcaccttaggtggcatgtaccacttgtacacccacacaca 9521943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 12748217 - 12748290
Alignment:
Q  105 tgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggt 178  Q
    ||||||||| || | |||| ||||||| ||||||||||||| ||||| | ||| ||||||| |||||| |||||    
T  12748217 tgatacataaaccactttaggtggcatataccacttgtacacccacatataattgtgacatctgtccatgtggt 12748290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 4434772 - 4434699
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 172  Q
    ||||||||||| |||||| |  |||||||||||||||||||||||| ||||||||| || ||||||||||||||    
T  4434772 gagtagtgatatatagaccaccttatgtggcatgtaccacttgtacttccacacactattgtgacatgtgtcca 4434699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 32599430 - 32599348
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||||||||||| |||  ||||| ||||||  ||||||||    
T  32599430 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacataattttgacaagtgtccttgtggtccc 32599348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 3121610 - 3121695
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||| |  |||  ||||||||||||||| ||||  || ||||||| |||||||||||||| |||||||||||    
T  3121610 gagtagtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtccccac 3121695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 13697146 - 13697075
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 171  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  13697146 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 13697075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 14945919 - 14945848
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgt 169  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||||||  || ||||||||    
T  14945919 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaaatgtaacatgtgt 14945848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 36272840 - 36272758
Alignment:
Q  102 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||||| |  ||| |||||||||||||||| |||| |||||||||||  ||||| ||||||  |||||||||||    
T  36272840 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccccac 36272758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 33299979 - 33300064
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||| |  ||| ||||||||||||| || |||| ||| | ||||| ||||||||||| || |||||||||||    
T  33299979 gagtagtgatacatagaccaccttaagtggcatgtaccatttatacacccatatacaattgtgacatgtgttcatgtggtccccac 33300064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 5562934 - 5563021
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||||||| |||| ||||||||||||| || ||||| || | | |||  ||||||||||| | |||||| ||||    
T  5562934 atgagtagtgatacatagactattttaggtggcatgtaccatttatacattcatatataattttgacatgtgtcgatgtggtctccac 5563021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 42061412 - 42061330
Alignment:
Q  100 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    ||||||||||||||||  | |||  ||||||||||||||||||||| ||||| |||||  ||||| ||||||  |||||||||    
T  42061412 agtagtgatacatagagcactttgggtggcatgtaccacttgtacacccacatacaattttgacaagtgtccttgtggtcccc 42061330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 24475883 - 24475798
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||| |||||||||||| |  ||| |||| ||||| ||||| |||| ||| ||||||| |||||||||||||| || ||||||||    
T  24475883 gagtaatgatacatagaccaccttaggtggtatgtatcacttatacacccatacacaattgtgacatgtgtccatgtagtccccac 24475798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 40095262 - 40095334
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtc 170  Q
    ||||||||||||||||||| |  |||  || ||||||||||||||||||||||| |||||  ||||| |||||    
T  40095262 tgagtagtgatacatagaccaccttagatgacatgtaccacttgtacatccacatacaattttgacaagtgtc 40095334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 14242697 - 14242639
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 157  Q
    |||||||||||||||||| |  ||| |||| ||||||||| |||||| |||||||||||    
T  14242697 gagtagtgatacatagaccatcttaggtggtatgtaccacctgtacacccacacacaat 14242639  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 25333173 - 25333214
Alignment:
Q  128 gcatgtaccacttgtacatccacacacaatggtgacatgtgt 169  Q
    |||||||||||||||||||| ||||||| | |||||||||||    
T  25333173 gcatgtaccacttgtacatcaacacacatttgtgacatgtgt 25333214  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 23860346 - 23860302
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgta 143  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||    
T  23860346 gagtagtgatacatagaccaccttaggtggcatgtaccacttgta 23860302  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 40216443 - 40216491
Alignment:
Q  133 taccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    ||||||||||||| ||||| | ||| |||||||||||||| ||||||||    
T  40216443 taccacttgtacacccacatataattgtgacatgtgtccatgtggtccc 40216491  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 13988247 - 13988330
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  13988247 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 13988330  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 36890377 - 36890460
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcccc 182  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||  ||||| ||||||  |||||||||    
T  36890377 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcccc 36890460  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 15285329 - 15285414
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    |||||||||||||||||| |  |||  ||||||||||||||| ||||  || ||||||| |||||||||||||| |||||||||||    
T  15285329 gagtagtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtccccac 15285414  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 12248299 - 12248355
Alignment:
Q  125 gtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    ||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||||||    
T  12248299 gtggcatataccacttgtacatccacatataattgtgacatgtgtccatgtggtccc 12248355  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 11247191 - 11247250
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 157  Q
    |||||||||||||||||||||  |||  |||||| ||| |||||||||||||||||||||    
T  11247191 tgagtagtgatacatagactaccttagatggcatatactacttgtacatccacacacaat 11247250  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 1447926 - 1447856
Alignment:
Q  102 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 172  Q
    |||| ||| |||||| | |||| |||||||||||||||| ||||||||| |||||| ||||||| ||||||    
T  1447926 tagttatatatagacaactttaggtggcatgtaccacttatacatccacgcacaattgtgacatatgtcca 1447856  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 20151478 - 20151516
Alignment:
Q  193 attttttgtctctcacacacgctcacatggggtggtata 231  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  20151478 atttattgtctctcacacactctcacatggggtggtata 20151516  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 43100388 - 43100310
Alignment:
Q  101 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtc 179  Q
    ||||||||||||| || |  ||| |||| || ||||||||||||| ||||| | ||| |||||||||||||| ||||||    
T  43100388 gtagtgatacataaaccatcttaggtggtatataccacttgtacacccacatataattgtgacatgtgtccatgtggtc 43100310  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 31741041 - 31741128
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||| |||||||||||| |  ||| |||||||||||||||| |||| ||| ||||||| |||||||||||| | ||| |||||||    
T  31741041 atgagtaatgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtctatgtgctccccac 31741128  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 46576425 - 46576366
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 157  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  46576425 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 46576366  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 48460658 - 48460731
Alignment:
Q  98 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcc 171  Q
    ||||||||||||||||||| |  ||| ||||||||||||| ||||||||||||| |||||  ||||| ||||||    
T  48460658 tgagtagtgatacatagaccaccttaggtggcatgtaccatttgtacatccacatacaattttgacaagtgtcc 48460731  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 43359001 - 43359053
Alignment:
Q  128 gcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtcc 180  Q
    |||||||| |||||||||||||| |||||| |||||| |||||||||||||||    
T  43359001 gcatgtactacttgtacatccactcacaattgtgacacgtgtccacgtggtcc 43359053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 38755079 - 38754992
Alignment:
Q  97 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||| |||||||||||| |  ||| ||||||||||||||||| ||| ||| ||| |||  ||||||||||||| ||| |||||||    
T  38755079 atgagtaatgatacatagaccaccttaggtggcatgtaccacttgaacacccatacataattatgacatgtgtccatgtgatccccac 38754992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 42974558 - 42974475
Alignment:
Q  101 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||||| || |  ||| |||||||||||||||| |||| ||||| ||||| ||||||||||| ||  ||||||||||    
T  42974558 gtagtgatacataaaccaccttaggtggcatgtaccacttatacacccacatacaattgtgacatgtgttcatatggtccccac 42974475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 11752604 - 11752682
Alignment:
Q  106 gatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccccac 184  Q
    ||||||||||| |  ||| |||||||||| |||||||||| | ||| | ||| ||||||||||| ||||||||||||||    
T  11752604 gatacatagaccaccttaggtggcatgtatcacttgtacacctacatataattgtgacatgtgttcacgtggtccccac 11752682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 28713679 - 28713759
Alignment:
Q  101 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    ||||||||||||| || |  ||| ||||||| ||||||||||||| ||||| | ||| |||||||||||||| ||| ||||    
T  28713679 gtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccc 28713759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 38349639 - 38349559
Alignment:
Q  101 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtccacgtggtccc 181  Q
    ||||||||||||| || |  ||| ||||||| ||||||||||||| ||||| | ||| |||||||||||||| ||| ||||    
T  38349639 gtagtgatacataaaccatcttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccc 38349559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 38754975 - 38754937
Alignment:
Q  193 attttttgtctctcacacacgctcacatggggtggtata 231  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  38754975 atttattgtctctcacacactctcacatggggtggtata 38754937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 33496608 - 33496653
Alignment:
Q  198 ttgtctctcacacacgctcacatggggtggtatattgtgtatatgg 243  Q
    ||||||||||||||| ||||||||| |||||||| ||||| |||||    
T  33496608 ttgtctctcacacactctcacatggagtggtataatgtgtgtatgg 33496653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 47480194 - 47480122
Alignment:
Q  99 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaatggtgacatgtgtcca 172  Q
    ||||| |||||||||||| |  ||| ||||||||||||| ||||||| ||| | ||||| ||||||||||||||    
T  47480194 gagtaatgatacatagaccaccttaggtggcatgtaccatttgtacaccca-atacaattgtgacatgtgtcca 47480122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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