View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_1 (Length: 863)
Name: NF17852_low_1
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 579; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Complemental strand, 6487638 - 6487036
Alignment:
| Q |
1 |
ttatttagtggattaataatttatatgtcataagttaaattacaaaaataaaataacttagaaaattaaattttttaggggttttcttgcaatttcatag |
100 |
Q |
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| T |
6487638 |
ttatttagtggattaataatttatatgtcattagttaaattacaaaaataaaataacttagaaaattgaattttttaggggttttcttgcaatttcatag |
6487539 |
T |
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| Q |
101 |
gtgttgaacatttaacaccatcaaactatatatcaagtcatttgaaacaagtcaaatcatcacttttgaaaatagggatcaaaactacactatctattgc |
200 |
Q |
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| T |
6487538 |
gtgttgaacatttaacaccatcaaactatatatcaagtcatttgaaacaagtcaaatcatcacttttgaaaatagggatcaaaactacactatctattgc |
6487439 |
T |
|
| Q |
201 |
tatatttcacttgcattgcatttttggggtaaattactagccgtatggttaaaatgctaattaataatttataccttaaaatagcactcaaaggcaacaa |
300 |
Q |
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| T |
6487438 |
tatctttcacttgcattgcatttttggggtaaattactagccgtatggttaaaatgctaattaataatttataccttaaaatagcactcaaaggcaacaa |
6487339 |
T |
|
| Q |
301 |
attaagaccacacgaagtgtaataacaagagccaattaatttttgtaccaattgaagcaatcctatattttaccaaggaaaaccgaatatctaggaccca |
400 |
Q |
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| T |
6487338 |
attaagaccacacgaagtgtaataacaagagccaattaattcttgtaccaattgaagcaatcctatattttaccaaggaaaaccgaatatctaggaccca |
6487239 |
T |
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| Q |
401 |
aaattataattttgtaagaacctcttaaagaaatggatttgttctacgtgtccatacatgatttgtttactattcatttccacaccatatttattatatt |
500 |
Q |
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| T |
6487238 |
aaattataattttgtaagaacctcttaaagaaatggatttgttttacgtgtccatacatgatttgtttactattcatttccacaccatatttattatatt |
6487139 |
T |
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| Q |
501 |
tatacatttttatatgctatctctctttcctctctcccgctcaacttaacagcttcctttcccatttctttagcccaaccaatcaatcaaagtcttcatt |
600 |
Q |
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| T |
6487138 |
tatacatttttatatgctctctctctttcctctctcccgctcaacttaacagcttcctttcccatttctttagcccaaccaatcaatcaaagtcttcatt |
6487039 |
T |
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| Q |
601 |
tag |
603 |
Q |
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| T |
6487038 |
tag |
6487036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 686 - 769
Target Start/End: Complemental strand, 6486954 - 6486867
Alignment:
| Q |
686 |
gtgtctgaatcggtgaaagagtaacaaacaaacaaaca----tcttgaatgatagtgagataagagagaaaagaggacatcatgtttg |
769 |
Q |
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| T |
6486954 |
gtgtctgaatcggtgaaagagtaacaaacaaacaaacaaacatcttgaatgatagtgagataagagagaaaagaggacatcatgtttg |
6486867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 806 - 863
Target Start/End: Complemental strand, 6486830 - 6486773
Alignment:
| Q |
806 |
acaacaataataacattcctcgtccacagtttatgcaatccgaaccccgattttccac |
863 |
Q |
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| T |
6486830 |
acaacaacaataacattcctcgtccacagtttatgcaatccgaaccccgattttccac |
6486773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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