View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_11 (Length: 342)
Name: NF17852_low_11
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 114 - 341
Target Start/End: Original strand, 26642579 - 26642823
Alignment:
| Q |
114 |
gaagagttgtttggcattgagatacgaggctttagttatgcgagaactcaagtctgctactattcaattgctacatgtttcgccattagaatggttaaat |
213 |
Q |
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| T |
26642579 |
gaagagttgtttggcattgagatacgaggctttagttgtgcgagaactcaagtctgctactattcaattgctacatgtttcgccattagaatggttaaat |
26642678 |
T |
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| Q |
214 |
tttgtggaagacgctgtgaagaacggttttcatgcagttgcagtaaaggtaacgaactatgagtgtatcgtg-----------------ttcgagattta |
296 |
Q |
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| T |
26642679 |
tttgtggaagacgctgtgaagaacggttttcatgcagttgcagtaaaggtaacgaaatatgcgtgtattgtgtttgtgataatgtgcaattcgagattta |
26642778 |
T |
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| Q |
297 |
gcttagttaatgcattttctgaaatggacttattagttttgaata |
341 |
Q |
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| T |
26642779 |
gcttagttaatgcattttctgaaatggacttattagttttgaata |
26642823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 26656015 - 26656170
Alignment:
| Q |
114 |
gaagagttgtttggcattgagatacgaggctttagttatgcgagaactcaagtctgctactattcaattgctacatgtttcgccattagaatggttaaat |
213 |
Q |
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|||||| ||||| || || ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||| |
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| T |
26656015 |
gaagagctgtttagctttaagatacgaggcgttagttatgcgagaactcaaatctgcaactattcaattgcttcaagtttcgccattagaatggttaaat |
26656114 |
T |
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| Q |
214 |
tttgtggaagacgctgtgaagaacggttttcatgcagttgcagtaaaggtaacgaa |
269 |
Q |
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| T |
26656115 |
tttgtggaagacgctgtgaagaacggttttcatgaagtttcagtaaaggtaacgaa |
26656170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 26642493 - 26642545
Alignment:
| Q |
27 |
tctctaatgattcaatttctataacaaatgcttgtgtaataatatgctaattcg |
80 |
Q |
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| T |
26642493 |
tctctaatgattcaatt-ctataacaaatgcttgtgtaataatatgctaattcg |
26642545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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