View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17852_low_13 (Length: 335)

Name: NF17852_low_13
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17852_low_13
NF17852_low_13
[»] chr4 (19 HSPs)
chr4 (117-327)||(55159906-55160115)
chr4 (112-245)||(47198599-47198732)
chr4 (118-245)||(28683508-28683634)
chr4 (118-281)||(43737593-43737756)
chr4 (119-171)||(3847887-3847939)
chr4 (117-168)||(42544487-42544538)
chr4 (116-167)||(47199394-47199445)
chr4 (117-171)||(55159179-55159233)
chr4 (117-166)||(26611283-26611332)
chr4 (123-171)||(3848573-3848621)
chr4 (119-186)||(25370507-25370574)
chr4 (116-171)||(28684227-28684282)
chr4 (118-185)||(55864856-55864923)
chr4 (117-166)||(11417686-11417735)
chr4 (118-159)||(25371552-25371593)
chr4 (117-166)||(29651332-29651381)
chr4 (118-166)||(11417937-11417985)
chr4 (118-166)||(36865717-36865765)
chr4 (118-166)||(45230365-45230413)
[»] chr2 (9 HSPs)
chr2 (117-325)||(5276464-5276672)
chr2 (125-180)||(2650236-2650291)
chr2 (117-186)||(41043308-41043377)
chr2 (118-166)||(14573261-14573309)
chr2 (112-160)||(45139686-45139734)
chr2 (115-166)||(21471014-21471065)
chr2 (125-164)||(24741807-24741846)
chr2 (116-166)||(24727819-24727869)
chr2 (118-166)||(21471954-21472002)
[»] chr1 (14 HSPs)
chr1 (118-327)||(37874064-37874272)
chr1 (118-291)||(35615767-35615939)
chr1 (117-291)||(48869768-48869942)
chr1 (131-263)||(17496065-17496197)
chr1 (117-171)||(35616770-35616824)
chr1 (117-171)||(51987826-51987880)
chr1 (118-171)||(48870748-48870801)
chr1 (115-166)||(48972445-48972496)
chr1 (118-171)||(51988459-51988512)
chr1 (115-166)||(51974434-51974485)
chr1 (125-171)||(1012554-1012600)
chr1 (118-171)||(8560839-8560892)
chr1 (118-166)||(16270207-16270255)
chr1 (118-166)||(23440865-23440913)
[»] chr6 (9 HSPs)
chr6 (123-325)||(9573640-9573842)
chr6 (118-171)||(7531829-7531882)
chr6 (118-171)||(9574566-9574619)
chr6 (118-166)||(3543063-3543111)
chr6 (123-166)||(3542819-3542862)
chr6 (117-171)||(7532435-7532489)
chr6 (117-166)||(7193337-7193386)
chr6 (118-166)||(24125972-24126020)
chr6 (118-166)||(33480628-33480676)
[»] chr8 (20 HSPs)
chr8 (112-282)||(39255636-39255806)
chr8 (1-117)||(6862941-6863057)
chr8 (117-282)||(44751607-44751772)
chr8 (114-245)||(61450-61581)
chr8 (118-245)||(1365829-1365956)
chr8 (73-117)||(6873916-6873960)
chr8 (118-171)||(39254787-39254840)
chr8 (208-264)||(12351809-12351865)
chr8 (125-171)||(27918042-27918088)
chr8 (117-166)||(34992264-34992313)
chr8 (117-168)||(25876520-25876571)
chr8 (1-34)||(34018306-34018339)
chr8 (117-166)||(41859309-41859358)
chr8 (118-171)||(44752565-44752618)
chr8 (161-281)||(217154-217274)
chr8 (161-281)||(693714-693834)
chr8 (161-281)||(697923-698043)
chr8 (161-281)||(730777-730897)
chr8 (161-281)||(854672-854792)
chr8 (118-166)||(34992015-34992063)
[»] chr3 (13 HSPs)
chr3 (118-291)||(17226968-17227139)
chr3 (118-171)||(17227943-17227996)
chr3 (125-180)||(37105063-37105118)
chr3 (118-166)||(38923665-38923713)
chr3 (115-159)||(41755496-41755540)
chr3 (123-166)||(32490195-32490238)
chr3 (112-171)||(49757177-49757236)
chr3 (75-105)||(33920685-33920715)
chr3 (116-166)||(36750437-36750487)
chr3 (117-166)||(44687163-44687212)
chr3 (117-166)||(52492279-52492328)
chr3 (125-165)||(21811886-21811926)
chr3 (123-171)||(42145273-42145321)
[»] chr5 (18 HSPs)
chr5 (118-245)||(13655581-13655708)
chr5 (115-180)||(2458340-2458405)
chr5 (117-166)||(12190158-12190207)
chr5 (117-185)||(26268343-26268411)
chr5 (118-185)||(2319266-2319333)
chr5 (115-185)||(2319948-2320018)
chr5 (117-171)||(13654932-13654986)
chr5 (120-184)||(39166591-39166655)
chr5 (124-171)||(4607470-4607517)
chr5 (123-166)||(33001937-33001980)
chr5 (116-166)||(8204118-8204168)
chr5 (116-166)||(13404703-13404753)
chr5 (112-166)||(33002816-33002870)
chr5 (116-166)||(36626630-36626680)
chr5 (118-166)||(8235269-8235317)
chr5 (118-166)||(15184017-15184065)
chr5 (114-166)||(36981041-36981093)
chr5 (122-186)||(39167420-39167484)
[»] scaffold1037 (1 HSPs)
scaffold1037 (123-281)||(2034-2192)
[»] scaffold1031 (1 HSPs)
scaffold1031 (123-281)||(2152-2310)
[»] chr7 (15 HSPs)
chr7 (115-185)||(45887961-45888031)
chr7 (115-185)||(4984806-4984875)
chr7 (116-185)||(4985375-4985444)
chr7 (116-185)||(4989473-4989542)
chr7 (113-166)||(41194508-41194561)
chr7 (117-185)||(47331934-47332002)
chr7 (116-166)||(38778852-38778902)
chr7 (119-185)||(48259799-48259865)
chr7 (117-166)||(37468909-37468958)
chr7 (118-166)||(668179-668227)
chr7 (118-158)||(669111-669151)
chr7 (118-166)||(17145622-17145670)
chr7 (118-166)||(37469005-37469053)
chr7 (118-166)||(38779563-38779611)
chr7 (122-185)||(47331260-47331324)
[»] scaffold0136 (1 HSPs)
scaffold0136 (118-186)||(20648-20716)
[»] scaffold0311 (1 HSPs)
scaffold0311 (107-166)||(160-219)
[»] scaffold0041 (1 HSPs)
scaffold0041 (118-166)||(27575-27623)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 117 - 327
Target Start/End: Complemental strand, 55160115 - 55159906
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtcttt 216  Q
    |||||||||||||||||||||| |||||||||| | |||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||||| |    
T  55160115 aggtggcatttaatttgggaaaggagacttttt-ctcaccatgggaaagtcttttctaatcattggatcatataaagaacacactattacaatagtctct 55160017  T
Q  217 caatgctatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccactatccatcttccatatctttacacatttcactgat 316  Q
    |||  ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||     
T  55160016 caacactagatttttatcttactatcttccccaaccactttctctcacatgcctctctcacccactattcatcttccatatctttacacatttcagtgaa 55159917  T
Q  317 tttttcttctc 327  Q
    |||||||||||    
T  55159916 tttttcttctc 55159906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 47198599 - 47198732
Alignment:
Q  112 aagttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatag 211  Q
    |||| ||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47198599 aagtgaggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacacactattacaatag 47198698  T
Q  212 tctttcaatgctatatttttatcttagtatcttc 245  Q
    ||| ||||  ||| ||| |||||||| |||||||    
T  47198699 tctctcaacactagattcttatcttactatcttc 47198732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 28683508 - 28683634
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttc 217  Q
    |||||||||||||||||| || ||||||| |||||||  ||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||    
T  28683508 ggtggcatttaatttggggaaggagacttctttcccattatgaaaaagt-ttttctaaccattggatcatacaaagaacgcactattacaatagtctctc 28683606  T
Q  218 aatgctatatttttatcttagtatcttc 245  Q
    ||  ||| ||| |||||||| |||||||    
T  28683607 aacactagattcttatcttactatcttc 28683634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 281
Target Start/End: Original strand, 43737593 - 43737756
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttc 217  Q
    |||| |||||||  ||||||| || |||||||| ||| ||| ||||||| |||| |||  ||||||||||| |||| |||||||||||| |||| || |     
T  43737593 ggtgtcatttaacatgggaaatgatactttttttccatcatagaaaagtgttttataattattggatcatataaagaacacactattactatagcctctt 43737692  T
Q  218 aatgctatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccac 281  Q
    ||  ||  |||||||| ||| ||||||  ||||||||| | ||||||||  |||||||||||||    
T  43737693 aacactggatttttatattactatcttttccaaccactctatctcacatgtctctctcacccac 43737756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 3847887 - 3847939
Alignment:
Q  119 gtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  3847887 gtggcatttaatttgggaaaggagacttttttcccaccatgggaaagtatttt 3847939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 42544487 - 42544538
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtct 168  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  42544487 aggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagtct 42544538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 47199445 - 47199394
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtc 167  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | ||||||    
T  47199445 taggtggcatttaatttgggaaaagagacttctttcccaccataggaaagtc 47199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 55159179 - 55159233
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||||| ||||||||||    
T  55159179 aggtggtatttaatttgggaaaggagacttctttcctaccatgggaaagtctttt 55159233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 26611332 - 26611283
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| |||||||||||||||| |||| |||||||||||||||| |||||    
T  26611332 aggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagt 26611283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 3848621 - 3848573
Alignment:
Q  123 catttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||| ||||    
T  3848621 catttaatttgggaaaggagacttctttcccaccatgggaaagtatttt 3848573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 25370507 - 25370574
Alignment:
Q  119 gtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatca 186  Q
    |||||||||||||||||||| |  | |||||||||||||||| ||||  |||||| |||||| |||||    
T  25370507 gtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattagatca 25370574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 28684282 - 28684227
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||| |||||||||||||||| ||||||||||||| ||||| | ||||| ||||    
T  28684282 taggtgacatttaatttgggaaaggagacttttttcctaccataggaaagtttttt 28684227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 55864923 - 55864856
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    |||||||||||||||  |||| |  | |||||||||||||||||||||  |||||| |||||||||||    
T  55864923 ggtggcatttaatttaagaaaggctagttttttcccaccatggaaaagctttttctgaccattggatc 55864856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 11417686 - 11417735
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 11417735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 25371593 - 25371552
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatg 159  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccatg 25371552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 29651381 - 29651332
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 29651332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 11417985 - 11417937
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagt 11417937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 36865765 - 36865717
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaagt 36865717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 45230365 - 45230413
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| ||||||||| ||||||||||| || ||||||||||||| |||||    
T  45230365 ggtgccatttaattcgggaaaagagagttctttcccaccatgggaaagt 45230413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 117 - 325
Target Start/End: Original strand, 5276464 - 5276672
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtcttt 216  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |    
T  5276464 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtcttttctaatcattggatcatacaaagaacacactgttacaatagtctct 5276563  T
Q  217 caatgctatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccactatccatcttccatatctttacacatttcactgat 316  Q
    |||  ||| |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||     
T  5276564 caacactagatttttatcttactatcttccccaaccactttctctcacatgcctctgtcacccactattcatcttccatttctttacacatttcactgag 5276663  T
Q  317 tttttcttc 325  Q
    |||||||||    
T  5276664 tttttcttc 5276672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 2650236 - 2650291
Alignment:
Q  125 tttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccatt 180  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||  |||||||    
T  2650236 tttaatttgggaaatgagacttttttcccatcatggaaaagtttttttaaaccatt 2650291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 41043377 - 41043308
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatca 186  Q
    |||||||||||||||||||||| |  | |||||||||| ||||||||||  |||||| ||||||| ||||    
T  41043377 aggtggcatttaatttgggaaaggctagttttttcccatcatggaaaagctttttctgaccattgaatca 41043308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 14573261 - 14573309
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| |||||||||||||||| |||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 14573309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 45139686 - 45139734
Alignment:
Q  112 aagttaggtggcatttaatttgggaaaagagacttttttcccaccatgg 160  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||| |||||    
T  45139686 aagttaggtggcatttaatttgggaaaggagacttcttttccatcatgg 45139734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 21471014 - 21471065
Alignment:
Q  115 ttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  21471014 ttaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 24741846 - 24741807
Alignment:
Q  125 tttaatttgggaaaagagacttttttcccaccatggaaaa 164  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  24741846 tttaatttgggaaagaagacttttttcccaccatggaaaa 24741807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 24727819 - 24727869
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||| ||||||||||||||||  | |||||||||||| |||||||||||    
T  24727819 taggtgccatttaatttgggaaagcacacttttttcccatcatggaaaagt 24727869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 21472002 - 21471954
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 118 - 327
Target Start/End: Original strand, 37874064 - 37874272
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttc 217  Q
    |||| ||||||| |||||||| ||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccatgggaaagtctttactaatcattggatcatacaaagaacacactattacaatagtctctc 37874163  T
Q  218 aatgctatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccactatccatcttccatatctttacacatttcactgatt 317  Q
    ||  ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |    
T  37874164 aacactagatttttatcttactatcttccccaaccactttctctcacatgcctctctcacccactattcatcttccatatctttacacattt-actgaat 37874262  T
Q  318 ttttcttctc 327  Q
    ||||||||||    
T  37874263 ttttcttctc 37874272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 118 - 291
Target Start/End: Original strand, 35615767 - 35615939
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttc 217  Q
    |||||||||||| |||| ||| ||||||| ||||||||||||| ||  |||||||||| ||||||||||||||||| |||||||||||||||||||| ||    
T  35615767 ggtggcatttaacttggaaaaggagacttctttcccaccatgggaat-tcttttctaatcattggatcatacaaagaacacactattacaatagtctctc 35615865  T
Q  218 aatgctatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccactatccatctt 291  Q
    ||  ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  35615866 aacactagatttttatcttactatcttccccaaccactttctctcacatgcctctctcacccactattcatctt 35615939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 117 - 291
Target Start/End: Original strand, 48869768 - 48869942
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtcttt 216  Q
    ||||| ||||||| |||||||| ||||||| ||| ||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |    
T  48869768 aggtgacatttaacttgggaaaggagacttcttttccaccatgggaaaatcttttctaatcattggatcatacaaagaacacactattacaatagtctct 48869867  T
Q  217 caatgctatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccactatccatctt 291  Q
    |||  ||| ||||||||| || |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  48869868 caacactagatttttatcatactatcttccccaaccactttctctcacatgcctctttcacccactattcatctt 48869942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 263
Target Start/End: Complemental strand, 17496197 - 17496065
Alignment:
Q  131 ttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttcaatgctatatttt 230  Q
    |||||||| ||||||| | | ||||||| ||||||| |||| ||| |||||||||||| |||| |||||||||||||||||||| || |  ||| ||| |    
T  17496197 ttgggaaaggagacttctattccaccatagaaaagtgttttttaatcattggatcatataaagaacacactattacaatagtctctccacactagattat 17496098  T
Q  231 tatcttagtatcttccccaaccactttctctca 263  Q
    ||||||| ||||||| |||| | || |||||||    
T  17496097 tatcttactatcttctccaatcgctctctctca 17496065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 35616824 - 35616770
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||    
T  35616824 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtctttt 35616770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 51987826 - 51987880
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||    
T  51987826 aggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtatttt 51987880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 48870801 - 48870748
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    ||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  48870801 ggtggaatttaacttgggaaatgagacttttttcccaccatgggaaagtctttt 48870748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 48972496 - 48972445
Alignment:
Q  115 ttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||||| |||||||||||||||| |||| || |||||||||||||||||||    
T  48972496 ttaggtgccatttaatttgggaaaggagagttctttcccaccatggaaaagt 48972445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 51988512 - 51988459
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||| ||||| ||||    
T  51988512 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaagtatttt 51988459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 51974434 - 51974485
Alignment:
Q  115 ttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  51974434 ttaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 51974485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 1012554 - 1012600
Alignment:
Q  125 tttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||||| |||| |||||||||||||||| ||||| ||||    
T  1012554 tttaatttgggaaaggagatttttttcccaccatgggaaagtttttt 1012600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 8560839 - 8560892
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||| |||||||||||||||| ||||||| ||||||| ||||| ||||| ||||    
T  8560839 ggtgacatttaatttgggaaaggagacttctttcccatcatgggaaagtatttt 8560892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 16270207 - 16270255
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 16270255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 23440913 - 23440865
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 23440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 123 - 325
Target Start/End: Original strand, 9573640 - 9573842
Alignment:
Q  123 catttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttcaatgc 222  Q
    ||||||| |||||||| ||||||| ||| |||| || | |||||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||  |    
T  9573640 catttaacttgggaaatgagacttcttttccactataggaaagtcttttctaatcattggatcatacaaagaacacactgttacaatagtctctcaacac 9573739  T
Q  223 tatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccactatccatcttccatatctttacacatttcactgattttttc 322  Q
    || |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  9573740 tagatttttatcttactatcttccccaaccactttctctcacatgcctctctcacccactattcatcttccatatctttacacatttcactgaatttttc 9573839  T
Q  323 ttc 325  Q
    |||    
T  9573840 ttc 9573842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 7531829 - 7531882
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||| ||||| ||||    
T  7531829 ggtggcatttaatttgggaaaggagacttctttcctaccatgggaaagtatttt 7531882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 9574619 - 9574566
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||| |||||||| ||||||| ||||||||||| | ||||||||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaagtctttt 9574566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 3543111 - 3543063
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| |||||||||||||||| |||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 3542819 - 3542862
Alignment:
Q  123 catttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||||||||||||| |||| |||||||||||||||| |||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaagt 3542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 7532489 - 7532435
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||||||||||||| ||||||| |||  |||||||| ||||| ||||    
T  7532489 aggtggcatttaatttgggaaaggagacttctttttcaccatgggaaagtatttt 7532435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 7193337 - 7193386
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  7193337 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 7193386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 24125972 - 24126020
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||||||||||||||||||| | || || ||||||||||||| |||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagt 24126020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 33480676 - 33480628
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 33480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 112 - 282
Target Start/End: Complemental strand, 39255806 - 39255636
Alignment:
Q  112 aagttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatag 211  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||    
T  39255806 aagttaggtggcatttaacttgggaaatgagacttctttcccaccatgggaaagtctttcctaatcattggatcatacaaagaacacactattacaatag 39255707  T
Q  212 tctttcaatgctatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccact 282  Q
    ||| ||||  ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  39255706 tctctcaacactagatttttatcttactatcttccccaaccactttctctcacatgcctctctcacccact 39255636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 6863057 - 6862941
Alignment:
Q  1 tgcaagacttgtctcacttatgcaccatagaatttgccataagtttatagtgtttatccatagttaaatatcagaaactgaggtgcagaagttaatttca 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6863057 tgcaagacttgtctcacttatgcaccagagaatttgccataagtttatagtgtttatccatagttaaatatcagaaactgaggtgcagaagttaatttca 6862958  T
Q  101 acttatgagagaagtta 117  Q
    |||||||||||||||||    
T  6862957 acttatgagagaagtta 6862941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 117 - 282
Target Start/End: Original strand, 44751607 - 44751772
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtcttt 216  Q
    ||||||||||||| |||||||| ||||||| ||||||| ||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |    
T  44751607 aggtggcatttaacttgggaaaggagacttctttcccatcatgggaaagtcttttttaatcattggatcatacaaagaacacactattacaatagtctct 44751706  T
Q  217 caatgctatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccact 282  Q
    |||  ||| |||||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||    
T  44751707 caacactagatttttatcttactatcttccccaatcactttctctcacatgcctctctcatccact 44751772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 61450 - 61581
Alignment:
Q  114 gttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtc 213  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  61450 gttaggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtc 61549  T
Q  214 tttcaatgctatatttttatcttagtatcttc 245  Q
    | ||||  ||| ||| |||||||| |||||||    
T  61550 tctcaacactagattcttatcttactatcttc 61581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 1365829 - 1365956
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttc 217  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacacactgttacaatagtctctc 1365928  T
Q  218 aatgctatatttttatcttagtatcttc 245  Q
    ||  ||| ||| |||||||| |||||||    
T  1365929 aacactagattcttatcttactatcttc 1365956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 6873960 - 6873916
Alignment:
Q  73 agaaactgaggtgcagaagttaatttcaacttatgagagaagtta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6873960 agaaactgaggtgcagaagttaatttcaacttatgagagaagtta 6873916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 39254787 - 39254840
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    ||||||||||||||||||||| ||||||| ||||||||||| | ||||||||||    
T  39254787 ggtggcatttaatttgggaaaggagacttctttcccaccataggaaagtctttt 39254840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 12351865 - 12351809
Alignment:
Q  208 atagtctttcaatgctatatttttatcttagtatcttccccaaccactttctctcac 264  Q
    ||||||| ||||  ||| |||||||||||| ||||||||||||||||||||||||||    
T  12351865 atagtctctcaacactagatttttatcttactatcttccccaaccactttctctcac 12351809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 27918088 - 27918042
Alignment:
Q  125 tttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  27918088 tttaatttgggaaatgagacttttttcccaccatgggaaagtttttt 27918042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 34992313 - 34992264
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| |||||||||||||||| |||| |||||||||||||||| |||||    
T  34992313 aggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 34992264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 25876520 - 25876571
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtct 168  Q
    ||||| ||||||||||||||||  ||| |||||||||||||||| |||||||    
T  25876520 aggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagtct 25876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34018306 - 34018339
Alignment:
Q  1 tgcaagacttgtctcacttatgcaccatagaatt 34  Q
    |||||||||||||||||||||||||| |||||||    
T  34018306 tgcaagacttgtctcacttatgcaccttagaatt 34018339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 41859309 - 41859358
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  41859309 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41859358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 44752618 - 44752565
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||| |||||||| ||||||| ||||||||||| | ||| ||||||    
T  44752618 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaaatctttt 44752565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 217274 - 217154
Alignment:
Q  161 aaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttcaatgctatatttttatcttagtatcttccccaaccactttctc 260  Q
    |||||| |||| ||| ||||||||||||  ||  ||| |||||||| ||||| | | ||| ||  |||||||| ||| ||||||  ||||||||| | ||    
T  217274 aaaagtgttttttaatcattggatcatatgaaaaacatactattactatagtttcttaatactggatttttatattactatcttttccaaccactctatc 217175  T
Q  261 tcacatacctctctcacccac 281  Q
    ||||||  |||||||||||||    
T  217174 tcacatgtctctctcacccac 217154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 693834 - 693714
Alignment:
Q  161 aaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttcaatgctatatttttatcttagtatcttccccaaccactttctc 260  Q
    |||||| |||| ||| ||||||||||||  ||  ||| |||||||| ||||| | | ||| ||  |||||||| ||| ||||||  ||||||||| | ||    
T  693834 aaaagtgttttttaatcattggatcatatgaaaaacatactattactatagtttcttaatactggatttttatattactatcttttccaaccactctatc 693735  T
Q  261 tcacatacctctctcacccac 281  Q
    ||||||  |||||||||||||    
T  693734 tcacatgtctctctcacccac 693714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 698043 - 697923
Alignment:
Q  161 aaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttcaatgctatatttttatcttagtatcttccccaaccactttctc 260  Q
    |||||| |||| ||| ||||||||||||  ||  ||| |||||||| ||||| | | ||| ||  |||||||| ||| ||||||  ||||||||| | ||    
T  698043 aaaagtgttttttaatcattggatcatatgaaaaacatactattactatagtttcttaatactggatttttatattactatcttttccaaccactctatc 697944  T
Q  261 tcacatacctctctcacccac 281  Q
    ||||||  |||||||||||||    
T  697943 tcacatgtctctctcacccac 697923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 730897 - 730777
Alignment:
Q  161 aaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttcaatgctatatttttatcttagtatcttccccaaccactttctc 260  Q
    |||||| |||| ||| ||||||||||||  ||  ||| |||||||| ||||| | | ||| ||  |||||||| ||| ||||||  ||||||||| | ||    
T  730897 aaaagtgttttttaatcattggatcatatgaaaaacatactattactatagtttcttaatactggatttttatattactatcttttccaaccactctatc 730798  T
Q  261 tcacatacctctctcacccac 281  Q
    ||||||  |||||||||||||    
T  730797 tcacatgtctctctcacccac 730777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 854792 - 854672
Alignment:
Q  161 aaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttcaatgctatatttttatcttagtatcttccccaaccactttctc 260  Q
    |||||| |||| ||| ||||||||||||  ||  ||| |||||||| ||||| | | ||| ||  |||||||| ||| ||||||  ||||||||| | ||    
T  854792 aaaagtgttttttaatcattggatcatatgaaaaacatactattactatagtttcttaatactggatttttatattactatcttttccaaccactctatc 854693  T
Q  261 tcacatacctctctcacccac 281  Q
    ||||||  |||||||||||||    
T  854692 tcacatgtctctctcacccac 854672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 34992015 - 34992063
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||| |||||||||||||||    
T  34992015 ggtgccatttaatttgggaaacgagagttattttccaccatggaaaagt 34992063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 118 - 291
Target Start/End: Original strand, 17226968 - 17227139
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttc 217  Q
    ||||||||||||||||||||| |||| || ||||||||||||| ||| ||||||||||||| || ||||||||||| |||||||||||||||||||  ||    
T  17226968 ggtggcatttaatttgggaaaggagatttctttcccaccatgggaaaatcttttctaaccaatgaatcatacaaagaacacactattacaatagtccctc 17227067  T
Q  218 aatgctatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccactatccatctt 291  Q
    ||  ||| |||||||||||  |||||||||||||||||||||||||||| |  |||||||||||||| ||||||    
T  17227068 aacactagatttttatcttcctatcttccccaaccactttctctcacatgc--ctctcacccactattcatctt 17227139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 17227996 - 17227943
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  17227996 ggtggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtctttt 17227943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 37105118 - 37105063
Alignment:
Q  125 tttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccatt 180  Q
    |||||||||||||| ||||||||||||||||||||| ||||| ||||  |||||||    
T  37105118 tttaatttgggaaacgagacttttttcccaccatgggaaagtttttttaaaccatt 37105063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 38923713 - 38923665
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || |||||||||||||||||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagt 38923665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 41755496 - 41755540
Alignment:
Q  115 ttaggtggcatttaatttgggaaaagagacttttttcccaccatg 159  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||    
T  41755496 ttaggtgtcatttaatttgggaaaggagagttttttcccaccatg 41755540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 32490238 - 32490195
Alignment:
Q  123 catttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||||||||||||| |||| || |||||||||||||||||||    
T  32490238 catttaatttgggaaaggagagttctttcccaccatggaaaagt 32490195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 49757236 - 49757177
Alignment:
Q  112 aagttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    ||||| |||| | |||||||||||||| ||||||||||||| ||||||| ||||| ||||    
T  49757236 aagttgggtgccgtttaatttgggaaaggagacttttttcctaccatgggaaagtttttt 49757177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 33920685 - 33920715
Alignment:
Q  75 aaactgaggtgcagaagttaatttcaactta 105  Q
    |||||||||||||||||||||||||||||||    
T  33920685 aaactgaggtgcagaagttaatttcaactta 33920715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 36750487 - 36750437
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  36750487 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 36750437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 44687212 - 44687163
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| |||||||||||||||| |||| || ||| |||||||||||||||    
T  44687212 aggtgccatttaatttgggaaaggagaattcttttccaccatggaaaagt 44687163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 52492328 - 52492279
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| |||||||||||||||| |||| || ||| |||||||||||||||    
T  52492328 aggtgtcatttaatttgggaaatgagagttcttttccaccatggaaaagt 52492279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 21811886 - 21811926
Alignment:
Q  125 tttaatttgggaaaagagacttttttcccaccatggaaaag 165  Q
    |||||||||||||| ||||||||||||| ||||||| ||||    
T  21811886 tttaatttgggaaatgagacttttttcctaccatgggaaag 21811926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 42145321 - 42145273
Alignment:
Q  123 catttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||||||| ||||||||||| ||||||| | ||||| ||||    
T  42145321 catttaatttgggaaaggagactttttttccaccataggaaagtttttt 42145273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 13655708 - 13655581
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttc 217  Q
    ||||||||||||||||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  13655708 ggtggcatttaatttgggaaaagagacttctttcccattatgggaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctc 13655609  T
Q  218 aatgctatatttttatcttagtatcttc 245  Q
    ||  ||  ||| |||||||| |||||||    
T  13655608 aacactgaattcttatcttactatcttc 13655581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 2458405 - 2458340
Alignment:
Q  115 ttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccatt 180  Q
    ||||||| | |||||||||||||| ||||||||||| ||||||||||||||| ||||  |||||||    
T  2458405 ttaggtgccgtttaatttgggaaatgagactttttttccaccatggaaaagtttttttaaaccatt 2458340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 12190207 - 12190158
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  12190207 aggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagt 12190158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 26268343 - 26268411
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    |||||||||||||||||||||| |  | |||||||||||||||| ||||  |||||| |||||||||||    
T  26268343 aggtggcatttaatttgggaaatgttagttttttcccaccatgggaaagctttttctgaccattggatc 26268411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 2319266 - 2319333
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    ||||||||||||||||||||| |  | |||||||||||||||| ||||  |||||| |||||||||||    
T  2319266 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggatc 2319333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 2320018 - 2319948
Alignment:
Q  115 ttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    |||||||||||||||||||||||| |  | |||||||||||||| | ||||  |||||| |||||||||||    
T  2320018 ttaggtggcatttaatttgggaaaggctagttttttcccaccataggaaagctttttctgaccattggatc 2319948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 13654932 - 13654986
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    ||||| |||||||||||||||| ||||||| ||||||||||| | ||||||||||    
T  13654932 aggtgacatttaatttgggaaaggagacttctttcccaccataggaaagtctttt 13654986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 39166591 - 39166655
Alignment:
Q  120 tggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggat 184  Q
    ||||||||||||||||||||   | ||||||||||| |||||||||  |||||| ||||||||||    
T  39166591 tggcatttaatttgggaaaaactagttttttcccactatggaaaagctttttctgaccattggat 39166655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 4607470 - 4607517
Alignment:
Q  124 atttaatttgggaaaagagacttttttcccaccatggaaaagtctttt 171  Q
    |||||||||||||||  |||||||||||||||||||| ||||| ||||    
T  4607470 atttaatttgggaaagtagacttttttcccaccatgggaaagtttttt 4607517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 33001937 - 33001980
Alignment:
Q  123 catttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||||||||||||| |||| || |||||||||||||||||||    
T  33001937 catttaatttgggaaaggagagttctttcccaccatggaaaagt 33001980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 8204118 - 8204168
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  8204118 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 8204168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 13404753 - 13404703
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||| |||||    
T  13404753 taggtggcatttaatttgggaacggactcttttttcccaccatgggaaagt 13404703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 33002870 - 33002816
Alignment:
Q  112 aagttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| ||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  33002870 aagtaaggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagt 33002816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 36626680 - 36626630
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  36626680 taggtgccatttaatttgggaaatgagagttctttcccaccatgggaaagt 36626630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 8235317 - 8235269
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||| ||||||||||||| |||  ||||||||||||||||| |||||    
T  8235317 ggtggcgtttaatttgggaacagactcttttttcccaccatgggaaagt 8235269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 15184065 - 15184017
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 15184017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 36981041 - 36981093
Alignment:
Q  114 gttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||||||| |||||||||||||  ||  ||||||| |||||||||||||||    
T  36981041 gttaggtggcgtttaatttgggaacggactctttttttccaccatggaaaagt 36981093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 39167484 - 39167420
Alignment:
Q  122 gcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatca 186  Q
    ||||||||||||||||| ||||||| ||||||| ||||| ||| | |||| | |||||| |||||    
T  39167484 gcatttaatttgggaaaggagacttctttcccatcatgggaaaatatttttttaccattagatca 39167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 281
Target Start/End: Original strand, 2034 - 2192
Alignment:
Q  123 catttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttcaatgc 222  Q
    |||||||  ||||||| || |||| |||||||| |||||||||| |||| ||| ||||| ||||||  ||| |||||||||||| ||||||| | ||  |    
T  2034 catttaacctgggaaatgatacttctttcccactatggaaaagtgttttttaatcattgaatcatatgaagaacacactattactatagtctcttaacac 2133  T
Q  223 tatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccac 281  Q
    |  |||||||| ||| ||||||  ||||||||| | ||||||||  |||||||||||||    
T  2134 tggatttttatattactatcttttccaaccactctatctcacatgtctctctcacccac 2192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 281
Target Start/End: Original strand, 2152 - 2310
Alignment:
Q  123 catttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatcatacaaaggacacactattacaatagtctttcaatgc 222  Q
    |||||||  ||||||| || |||| |||||||| |||||||||| |||| ||| ||||| ||||||  ||| |||||||||||| ||||||| | ||  |    
T  2152 catttaacctgggaaatgatacttctttcccactatggaaaagtgttttttaatcattgaatcatatgaagaacacactattactatagtctcttaacac 2251  T
Q  223 tatatttttatcttagtatcttccccaaccactttctctcacatacctctctcacccac 281  Q
    |  |||||||| ||| ||||||  ||||||||| | ||||||||  |||||||||||||    
T  2252 tggatttttatattactatcttttccaaccactctatctcacatgtctctctcacccac 2310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 45888031 - 45887961
Alignment:
Q  115 ttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    |||||||||||||||||||||||| |  | |||||||||||||||| ||||  |||||| |||||||||||    
T  45888031 ttaggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggatc 45887961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 4984806 - 4984875
Alignment:
Q  115 ttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    |||||||||||||||||||||||| |  | |||||| ||||||||||||||  |||||| |||||||||||    
T  4984806 ttaggtggcatttaatttgggaaaggttagtttttt-ccaccatggaaaagctttttctgaccattggatc 4984875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 4985444 - 4985375
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    |||||| |||||||||||||||| |  | |||||||||||||||| ||||  |||||| |||||||||||    
T  4985444 taggtgacatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatc 4985375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 4989542 - 4989473
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    |||||| |||||||||||||||| |  | |||||||||||||||| ||||  |||||| |||||||||||    
T  4989542 taggtgacatttaatttgggaaatgctagttttttcccaccatgggaaagctttttctgaccattggatc 4989473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 41194508 - 41194561
Alignment:
Q  113 agttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  41194508 agttaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41194561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 47332002 - 47331934
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    ||||| |||||||||||||||| |  | |||||||||||||||| ||||  |||||| |||||||||||    
T  47332002 aggtgacatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggatc 47331934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 38778852 - 38778902
Alignment:
Q  116 taggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  38778852 taggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38778902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 48259865 - 48259799
Alignment:
Q  119 gtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    |||||||||||||||||||| |  | |||||||||||||||| |||   |||||| |||||||||||    
T  48259865 gtggcatttaatttgggaaatgttagttttttcccaccatgggaaaactttttctgaccattggatc 48259799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 37468909 - 37468958
Alignment:
Q  117 aggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  37468909 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37468958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 668179 - 668227
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 668227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 669151 - 669111
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccat 158  Q
    |||| |||||||||||||||| |||| ||||||||||||||    
T  669151 ggtgccatttaatttgggaaatgagagttttttcccaccat 669111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 17145622 - 17145670
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 17145670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 37469053 - 37469005
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37469005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 38779611 - 38779563
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38779563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 47331260 - 47331324
Alignment:
Q  122 gcatttaatttgggaaaagag-acttttttcccaccatggaaaagtcttttctaaccattggatc 185  Q
    |||||||||||||||||||   | |||||||||||||||  ||||| |||||| |||||||||||    
T  47331260 gcatttaatttgggaaaaggttagttttttcccaccatgagaaagttttttctgaccattggatc 47331324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 20648 - 20716
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagtcttttctaaccattggatca 186  Q
    ||||||||||||||||| ||| |  |||||||| ||||||||| ||||  |||||| ||||||||||||    
T  20648 ggtggcatttaatttggaaaaggctactttttttccaccatgggaaagatttttctgaccattggatca 20716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 219 - 160
Alignment:
Q  107 gagagaagttaggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    ||||||||  ||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  219 gagagaagagaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 27623 - 27575
Alignment:
Q  118 ggtggcatttaatttgggaaaagagacttttttcccaccatggaaaagt 166  Q
    |||| |||||||||||| ||| |||| |||||||||||||||| |||||    
T  27623 ggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagt 27575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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