View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_15 (Length: 318)
Name: NF17852_low_15
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 36887631 - 36887898
Alignment:
| Q |
17 |
atcacaagaaagttagggtttactaaaagatcgaaaaactaaattaatccatatccactatcaaattaattaaatagatcataacttcagaataataaca |
116 |
Q |
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||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| || |||||| | ||||| |||| |||| |
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| T |
36887631 |
atcacaagaaaattagggtatactaaaagatccaaaaactaaattaatccatatccacaatcaaattaa----atggatcatgatttcaggataacaaca |
36887726 |
T |
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| Q |
117 |
aaattagataatcaagattcaacagtgataatccagattctagaacaattatcgaagttaccttcaggtgaatgagttaacgcccaagctctgagaaatc |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
36887727 |
aaattagaaaatcaagattcaacagtgataatccagattctggaaaaattatcgaagttaccttcggctgaatgagttaacgcc-aagctctgagaaatc |
36887825 |
T |
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| Q |
217 |
aaaattgaggagaagagaaccagattgagaagcaggtaaaggaagttacgaatcatttttctgagaattggaa |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36887826 |
aaaattgaggagaagagaaccagattgagaagcaggtaaaggaagttacgaatcatttttctgagaattggaa |
36887898 |
T |
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