View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17852_low_16 (Length: 306)
Name: NF17852_low_16
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 40285388 - 40285676
Alignment:
| Q |
10 |
agaagaatgtctgtggatcaatagggagacacatgcggggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatgcgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40285388 |
agaagaatgtctgtggatcaatagggagacgcgtgcggggtgttgatggtgtgtattcagatggtaaatgcttagggagtggtggtgatgaagatgcgtc |
40285487 |
T |
|
| Q |
110 |
gacaatgtcatgatgaggagcattatc---atcacatgaaagtgcagcatgatcaccatggttcataatctttgagttatcactgatgagttgtttcttc |
206 |
Q |
| |
|
|| |||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40285488 |
gataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatggttcatcatctttgagttatcactgatgagttgtttcttc |
40285587 |
T |
|
| Q |
207 |
tttctttccatggaatttgttgatggtaagagtgagggtagggtatcaagaaagtca---aagagtttgtatgctgtgaatgaataatt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40285588 |
tttctttccatggaatttgttgatggtaagagtgagggtagggtatcaagaaagtcaaagaagagtttgtatgctgtgaatgaataatt |
40285676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 102 - 292
Target Start/End: Complemental strand, 40457690 - 40457494
Alignment:
| Q |
102 |
gatgcgtcgacaatgtcatgatgaggagcattatc---atcacatgaaagtgcagcatgatcaccatggttcataatctttgagttatcactgatgagtt |
198 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40457690 |
gatgcgtcgataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatggttcatcatctttgagttatcactgatgagtt |
40457591 |
T |
|
| Q |
199 |
gtttcttctttctttccatggaatttgttgatggtaagagtgagggtagggtatcaagaaagtca---aagagtttgtatgctgtgaatgaataatt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40457590 |
gtttcttctttctttccatggaatttgttgatggtaagagtgagggtagggtatcaagaaagtcaaagaagagtttgtatgctgtgaatgaataatt |
40457494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 40457869 - 40457810
Alignment:
| Q |
46 |
ggggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatg |
105 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40457869 |
ggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtggtgatgaagatg |
40457810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 40280481 - 40280540
Alignment:
| Q |
46 |
ggggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatg |
105 |
Q |
| |
|
|||||| |||||| || |||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
40280481 |
ggggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatg |
40280540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 40280654 - 40280712
Alignment:
| Q |
47 |
gggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatg |
105 |
Q |
| |
|
||||| |||||| || |||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
40280654 |
gggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatg |
40280712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University