View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17852_low_17 (Length: 301)
Name: NF17852_low_17
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 31205456 - 31205183
Alignment:
| Q |
11 |
cacatagagtaaattatgattatatccagtagtacacatagcaccacaagagcaatggacacgataggtacatgtaggtattggcgtatacatctctaat |
110 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31205456 |
cacatagagtaaattatgattagatctagcagtacacatagcatcacaagagcaatggacacgacaggtacatgtaggtattggcgtatacatctctaat |
31205357 |
T |
|
| Q |
111 |
tcttccacaaaatcttaagatcagaattaaatttagttactgttcaatgctcttgcttaagagcataaatttcttgaaattttgatacacgaaccaaatc |
210 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31205356 |
tcttccacaaaatctgaagatcaggattaaatttagttactgttcaatgctcttgcttaagagcataaatttcttgaaattttgatacacgaaccaaatc |
31205257 |
T |
|
| Q |
211 |
accttgagaaaagtgttctttcaaatcattccaaacatcaattgcattttctgtaaatacaatgggatcgattc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
31205256 |
accttgagaaaagtgttctttcaaatcattccaaacatcaactgtattttccataaatacaatgggatcgattc |
31205183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 6933532 - 6933264
Alignment:
| Q |
11 |
cacatagagtaaattatgattatatccagtagtacacatagcaccacaagagcaatggacacgataggtacatgtaggtattggcgtatacatctctaat |
110 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||| |||||| ||||||||||| |||| || |||||||||||||||||||| |||||| |||| | |
|
|
| T |
6933532 |
cacatagagtaaattatgattagatctagcagtacgcatagcttcacaagagcaactgacatgacaggtacatgtaggtattggcatatacaattctagt |
6933433 |
T |
|
| Q |
111 |
tcttcc-acaaaatcttaagatcagaattaaatttagttactgttcaatgctcttgcttaagagcataaatttcttga---aattttgatacacgaacca |
206 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |||||| |||| |||||||||||| ||||||||||||||||| |||| |||||||||| ||| |
|
|
| T |
6933432 |
tcttcccacaaaatcttaagatcagaaaaaaattcagttaccgttcgatgctcttgcttgagagcataaatttcttgttgtaattctgatacacgaccca |
6933333 |
T |
|
| Q |
207 |
aatcaccttgagaaaagtgttctttcaaatcattccaaacatcaattgcattttctgtaaatacaatgg |
275 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
6933332 |
aatcacctagagaaaagcgttatttcaaatcattccaaacatctaccgcattttctataaatacaatgg |
6933264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 18435722 - 18435990
Alignment:
| Q |
11 |
cacatagagtaaattatgattatatccagtagtacacatagcaccacaagagcaatggacacgataggtacatgtaggtattggcgtatacatctctaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||| |||| | |
|
|
| T |
18435722 |
cacatagagtaaattatgattatatctagcagtatgcatagcttcacaagagcaacggacacgacaggtacatgtaggtattggcatatacatttctagt |
18435821 |
T |
|
| Q |
111 |
tcttcc-acaaaatcttaagatcagaattaaatttagttactgttcaatgctcttgcttaagagcataaatttcttga---aattttgatacacgaacca |
206 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| |||| |||||| ||||| ||||||||||||||||| | || |||||| || || | |
|
|
| T |
18435822 |
tcttcccacaaaatcttaagatcagagaaaaatttagttaccgttcgatgctcctgcttgagagcataaatttcttgttgcagttctgatacgcggacta |
18435921 |
T |
|
| Q |
207 |
aatcaccttgagaaaagtgttctttcaaatcattccaaacatcaattgcattttctgtaaatacaatgg |
275 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
18435922 |
aatcaccttgagagaagcgttctttcaaatcattccaaacatcgaccgcattttccataaatacaatgg |
18435990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 19474425 - 19474472
Alignment:
| Q |
203 |
accaaatcaccttgagaaaagtgttctttcaaatcattccaaacatca |
250 |
Q |
| |
|
||||||||||| || |||||| |||| ||||||||||||||||||||| |
|
|
| T |
19474425 |
accaaatcaccatgtgaaaagcgttcattcaaatcattccaaacatca |
19474472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 30152304 - 30152036
Alignment:
| Q |
11 |
cacatagagtaaattatgattatatccagtagtacacatagcaccacaagagcaatggacacgataggtacatgtaggtattggcgtatacatctctaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||| |||| | |
|
|
| T |
30152304 |
cacatagagtaaattatgattatatctaacagtacgcatagcttcacaagagcaacggacacgacaggtacatgtaggtattggcatatacatttctagt |
30152205 |
T |
|
| Q |
111 |
tcttcc-acaaaatcttaagatcagaattaaatttagttactgttcaatgctcttgcttaagagcataaatttcttga---aattttgatacacgaacca |
206 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| |||| |||||| ||||| ||||||||||||||||| | || |||||| | ||| | |
|
|
| T |
30152204 |
tcttcccacaaaatcttaagatcagagaaaaatttagttaccgttcgatgctcctgcttgagagcataaatttcttgttgcagttctgatacgcaaacta |
30152105 |
T |
|
| Q |
207 |
aatcaccttgagaaaagtgttctttcaaatcattccaaacatcaattgcattttctgtaaatacaatgg |
275 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
30152104 |
aatcaccttgagagaaacgttctttcaaatcattccaaacatcgaccgcattttccataaatacaatgg |
30152036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 26363234 - 26363281
Alignment:
| Q |
203 |
accaaatcaccttgagaaaagtgttctttcaaatcattccaaacatca |
250 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||||||||||||||| |
|
|
| T |
26363234 |
accaaatcaccttgagaaaatcgttccttcagatcattccaaacatca |
26363281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University