View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_18 (Length: 298)
Name: NF17852_low_18
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_18 |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 30928036 - 30927739
Alignment:
| Q |
1 |
tagacttgaataataattatttaattatatggttcacataacatacaagaattatttaattataatgttgcaagccctaaagctctttaatcattttgcg |
100 |
Q |
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| T |
30928036 |
tagacttgaacaataattatttaattatatggttcacataacatacaagaattatttaattataatattgcaagccctaaagctctttaatcattttgcg |
30927937 |
T |
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| Q |
101 |
catgcagggatctacgaagacaacatgggcagtttctttccttacattctacaatacatcctccactgaaacatgcatcaacgcaattctgctcacaaag |
200 |
Q |
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| T |
30927936 |
catgcagggaactacgaagacaacatgggcagtttcttttcttacattctacaatacatcctccactgaaacatgcatcaacgcaattctgctcacaaag |
30927837 |
T |
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| Q |
201 |
acgacaatcatatttacaaccatctattgattgagttgcgtcagatacttgattcacaacaaagataatcattaacatcatcattattacggtgatac |
298 |
Q |
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| T |
30927836 |
acgacaatcatatttacaagcatctattgattgagttgcgtcggatacttgattcacaacaaagataatcattaacatcatcattattatggtgatac |
30927739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 30920982 - 30920681
Alignment:
| Q |
1 |
tagacttgaataataattatttaattatatggttcacataacatacaagaattatttaattataatgttgcaa-gccctaa---agctctttaatcattt |
96 |
Q |
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| T |
30920982 |
tagacttgaacaataattatttaattatatggttcacataacatacaagaattatttaattataatgttgcaaagccctaataaagctctttaatcattt |
30920883 |
T |
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| Q |
97 |
tgcgcatgcagggatctacgaagacaacatgggcagtttctttccttacattctacaatacatcctccactgaaacatgcatcaacgcaattctgctcac |
196 |
Q |
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| T |
30920882 |
tgcgcatgcagggaactacgaagacaacatgggcagtttctttccttacattctacaatacatcctccactgaaacatgcatcaacgcaattctgctcac |
30920783 |
T |
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| Q |
197 |
aaagacgacaatcatatttacaaccatctattgattgagttgcgtcagatacttgattcacaacaaagataatcattaacatcatcattattacggtgat |
296 |
Q |
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| T |
30920782 |
aaagaccacaatcatatttacaagcatctattgattgagttgcgtcggatacttgattcacaacaaagataaccattaacatcatcattattacggtgat |
30920683 |
T |
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| Q |
297 |
ac |
298 |
Q |
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|| |
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| T |
30920682 |
ac |
30920681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 27835490 - 27835425
Alignment:
| Q |
233 |
gagttgcgtcagatacttgattcacaacaaagataatcattaacatcatcattattacggtgatac |
298 |
Q |
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| T |
27835490 |
gagttgcgtgacatactcgagtcacaaccaacataattattaacatcatcattattaaggtgatac |
27835425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 3389056 - 3389132
Alignment:
| Q |
222 |
atctattgattgagttgcgtcagatacttgattcacaacaaagataatcattaacatcatcattattacggtgatac |
298 |
Q |
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| T |
3389056 |
atctatagattgagttgcatcagatacttgagtcacaacaaacataatcattaccatcatcatcatcaaggtgatac |
3389132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 24649134 - 24649189
Alignment:
| Q |
229 |
gattgagttgcgtcagatacttgattcacaacaaagataatcattaacatcatcat |
284 |
Q |
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| T |
24649134 |
gattgagttgcgtcgcatacttgagtcacaacaaacataatcattaacattatcat |
24649189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 11990484 - 11990560
Alignment:
| Q |
222 |
atctattgattgagttgcgtcagatacttgattcacaacaaagataatcattaacatcatcattattacggtgatac |
298 |
Q |
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|||||| ||||||||||| ||| | |||||| ||||||| | |||||||||| ||||||||| |||| |||||||| |
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| T |
11990484 |
atctatagattgagttgcatcacaaacttgagtcacaacgatcataatcattaccatcatcatcattaaggtgatac |
11990560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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