View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_2 (Length: 517)
Name: NF17852_low_2
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 130 - 502
Target Start/End: Complemental strand, 21182426 - 21182054
Alignment:
| Q |
130 |
tcgtgaccaacgttccaaacaacaactataatacctatgcaacgctcttggactcaggaaacttggtactattgaacgcctctaacaaagcgattttatg |
229 |
Q |
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| T |
21182426 |
tcgtgaccaacgttccaaacaacaactataatacctatgcaacgctcttggactcaggaaacttggtactattgaacgcctctaacaaacagattttatg |
21182327 |
T |
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| Q |
230 |
gcagagttttaatcaccccacggatacccttttacctggaatgaacatcggacacgatattaacacagggtacactttgtctttgagatcatggacaact |
329 |
Q |
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| T |
21182326 |
gcagagttttaatcaccccacggatacccttttacctggaatgaacatcggacacgatattaacacagggtacactttgtctttgagatcatggacaact |
21182227 |
T |
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| Q |
330 |
gcagaagaccctgctcctggaccgtatactctccaatatgatgttggcatggcgagtctaaccataaataaaggttctaatgtgttatgggttgatggta |
429 |
Q |
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| T |
21182226 |
gcagaagaccctgctcctggaccgtatactctccaatatgatgttggcatggcgagtctaaccataaataaaggttctaatgtgttatgggttgatggta |
21182127 |
T |
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| Q |
430 |
attccaatttatctattcagggtgttttaaatcgagtggatttgcaactcaaaagagaccatgacacactttc |
502 |
Q |
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| T |
21182126 |
attccaatttatctattcagggtgttttaaatcgagtggatttgcaactcaaaagagaccatgacacactttc |
21182054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 23177399 - 23177729
Alignment:
| Q |
9 |
gtagcaaaggacaagattatttgggttgccaacagagattacgcatttcaaacatcctcggcgttacttaccattcatcctgatggtaatattgtgatca |
108 |
Q |
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| T |
23177399 |
gtagcaaatgacaagattgtttgggttgccaacagagacaacgcatttcaaacatcctcggtgtttcttaccattgaccatgatggtaatattgtaatca |
23177498 |
T |
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| Q |
109 |
tagatggacaaatgacgtacctcgtgaccaacgttccaaacaacaactataat---------------acctatgcaacgctcttggactcaggaaactt |
193 |
Q |
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| T |
23177499 |
tagatggagatatgatgtcctacgtgactggtgctccaaacagcagcaacaatagcattaggaatagtacctacgcaaccctcttggacacaggaaactt |
23177598 |
T |
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| Q |
194 |
ggtactattgaacgcctctaacaaagcgattttatggcagagttttaatcaccccacggatacccttttacctggaatgaacatcggacacgatattaac |
293 |
Q |
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| T |
23177599 |
ggtactggtgaataattctaaccaagcaattttatggcagagttttgatcaccccacagatacccttttgcctggaatgaacataggctacgatactgac |
23177698 |
T |
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| Q |
294 |
acagggtacactttgtctttgagatcatgga |
324 |
Q |
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| T |
23177699 |
acaggacacacttggtcattgagatcatgga |
23177729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 23186537 - 23186858
Alignment:
| Q |
9 |
gtagcaaaggacaagattatttgggttgccaacagagattacgcatttcaaacatcctcggcgttacttaccattcatcctgatggtaatattgtgatca |
108 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||||||||| ||||| |||| |
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| T |
23186537 |
gtagcaaatgacaagattgtttgggttgccaacagagattacgaacctcaaacatcctcggcgtttcttaccattcacgatgatggtaacattgtcatca |
23186636 |
T |
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| Q |
109 |
tagatggacaaatgacgtacctcgtgaccaacgttccaaacaacaacta------taatacctatgcaacgctcttggactcaggaaacttggtactatt |
202 |
Q |
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| T |
23186637 |
tagatggaggtatgatccgctacgtgactggtgctccaagtaacaacaatcgtattagtacctacgcaaccctgttggacacaggaaacttggtactggt |
23186736 |
T |
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| Q |
203 |
gaacgcctctaacaaagcgattttatggcagagttttaatcaccccacggatacccttttacctggaatgaacatcggacacgatattaacacagggtac |
302 |
Q |
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||| |||||| ||| |||||||||||||| ||| || ||||||| |||||||||||||||||||||| | | |||||||||| | ||||||| |
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| T |
23186737 |
gaataagtctaaccaagtaattttatggcagagctttgataaccccaccgatacccttttacctggaatgaccttaggacacgatacttacacaggacgt |
23186836 |
T |
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| Q |
303 |
actttgtctttgagatcatgga |
324 |
Q |
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|||| ||| ||||||||||||| |
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| T |
23186837 |
acttggtcattgagatcatgga |
23186858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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