View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_27 (Length: 250)
Name: NF17852_low_27
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 40239204 - 40239309
Alignment:
| Q |
12 |
tatactatactaatttggtgtgcaacaaataaaaacagcatccatttgatcatcagaatatagtactattcttcgcctactaatgttgctcaagtcatgc |
111 |
Q |
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| T |
40239204 |
tatactatactaatttggtgtgcaacaaataaaagcagcatgcatttgatcatcagaatatagtacttttcttcgcctactaatgttgctcaagtcatgc |
40239303 |
T |
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| Q |
112 |
ccgtat |
117 |
Q |
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|||||| |
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| T |
40239304 |
ccgtat |
40239309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 40241782 - 40241872
Alignment:
| Q |
117 |
tacttcatgcattaaatcagccaagtatgcattttcacacgtagtggttacacacatgctgaccaatgcatttaggagtatactgtcaaga |
207 |
Q |
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| T |
40241782 |
tacttcatgcattaaatcagctaggtatgcattttcacacgtagtggttacacacatgctgaccaatgcatttaggagtataatgtcaaga |
40241872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 40241921 - 40241959
Alignment:
| Q |
212 |
gacagttaaatttgatgaccatcatgagtcaaaacccaa |
250 |
Q |
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| T |
40241921 |
gacagttaaatttgatgaccatcatgagtcaaaagccaa |
40241959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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