View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_28 (Length: 247)
Name: NF17852_low_28
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_28 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 26643202 - 26642966
Alignment:
| Q |
11 |
aaatcttgaattagaaactattctcttcaaatttcgaatagcatattgtgaaaatgatgtgtacgtgatgtagttaaacttaaacatgcttgccagtgca |
110 |
Q |
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| T |
26643202 |
aaatcatgaattagaaactattctcttcaaatttcgaatagcatattgtgaaaatgatgtgtacgtgatgtagttaaacttaaacatgcttgccagtgca |
26643103 |
T |
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| Q |
111 |
ataaacagcatttgaatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactg |
210 |
Q |
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| T |
26643102 |
ataaacagcatttgaatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactg |
26643003 |
T |
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| Q |
211 |
atagtattagccttcaaattatcagaaatcacgtctc |
247 |
Q |
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| T |
26643002 |
atagtattagccttcaaattatcagaaatcacgtctc |
26642966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 26656559 - 26656435
Alignment:
| Q |
123 |
tgaatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagtattagcc |
222 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| ||||||| ||||||| |
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| T |
26656559 |
tgaatgttcaatgcaaaccaatgaagatataccagaacgtgaagtaattgatgtcagtgcaaaattcctgagcctagtaatctcgctgatagcattagcc |
26656460 |
T |
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| Q |
223 |
ttcaaattatcagaaatcacgtctc |
247 |
Q |
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| T |
26656459 |
ttcaaattttcaggaatcgcgtctc |
26656435 |
T |
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