View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_29 (Length: 246)
Name: NF17852_low_29
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 1554818 - 1555046
Alignment:
| Q |
18 |
aaccacccacatcagaatgcaacattaccaaaccaccaacttgtgccattgcctgcagcaaaagatctcacgttcatgcccgcttttaaagcgcatcata |
117 |
Q |
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| T |
1554818 |
aaccaccgacatcaggatgcaacattaccaaaccaccaacttgtgccattgcctgcagcaaaagatctcacgttcatgcccgcttttaaagcgcatcata |
1554917 |
T |
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| Q |
118 |
acatgaaccatatttcttttttactcatatgttgcttgcatagaacaacagttatcaagctaatccgcaaactttggaacatcacatacattggtcgttt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1554918 |
acataaaccatatttcttttttactcatatgttgcttgcatagaacaacagttatcaagctaatccgcaaactttggaacatcacatacattggtcgttt |
1555017 |
T |
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| Q |
218 |
atatctactccaaaggtcttgcgactttt |
246 |
Q |
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| T |
1555018 |
atatctactccaaaggtcttgcgactttt |
1555046 |
T |
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