View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_31 (Length: 236)
Name: NF17852_low_31
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 27261396 - 27261604
Alignment:
| Q |
10 |
gaagaatatgaaaatagatcggaggagaagacgtgaaatnnnnnnnnnnnnnttgacattaaaaagttgaattacaaaattgcccttcattttacttgtt |
109 |
Q |
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| T |
27261396 |
gaagaaaatgaaaatagatcggaggagaagacgtgaaataaaaaataaaaaattgacattaaaaagttgaattacaaaattgtccttcattttacttgtt |
27261495 |
T |
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| Q |
110 |
tttaaaaaggaaatgttggggnnnnnnngtccaaacatccaaggtg-ttaatgctaaaacacaacttcataaaagaggatgggtgtgttgtagcattgcc |
208 |
Q |
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| T |
27261496 |
tttaaaaaggaaatgttgggg-ttttttgtccaaacatacaaggtgtttaatgctaaaacacaccttcataaaagagggtggatgtgttgtagcattgcc |
27261594 |
T |
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| Q |
209 |
atatatatat |
218 |
Q |
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||||||||| |
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| T |
27261595 |
ctatatatat |
27261604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 27260897 - 27260739
Alignment:
| Q |
62 |
ttgacattaaaaagttgaattacaaaattgcccttcattttacttgtttttaaaaaggaaatgttggggnnnnnnngtccaaacatccaaggtg-ttaat |
160 |
Q |
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| T |
27260897 |
ttgacattaaaaacttgaattacaaaattgcccttcattttacttgtttttaaaaaggaaatgttgggttttttttgtccaaacatggaaggtgtttaat |
27260798 |
T |
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| Q |
161 |
gctaaaacacaacttcataaaagaggatgggtgtgttgtagcattg-ccatatatatat |
218 |
Q |
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| T |
27260797 |
gctaaaacacaccttcataaaagagggtgggtgtgttgtagcattgcccatatatatat |
27260739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 43051715 - 43051656
Alignment:
| Q |
159 |
atgctaaaacacaacttcataaaagaggatgggtgtgttgtagcattgccatatatatat |
218 |
Q |
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| T |
43051715 |
atgctaaaacacaccttcacaaaagtgagtgggtgtgttgtagcattcccctatatatat |
43051656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 11210106 - 11210262
Alignment:
| Q |
62 |
ttgacattaaaaagttgaattacaaaattgcccttcattttacttgtttttaaaaaggaaatgttggggnnnnnnngtccaaacatccaaggtg-ttaat |
160 |
Q |
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| T |
11210106 |
ttgacattaaaaagttgaattacaaaattgcccttcattttacttgtttttaaaaaggaaatgttgggg-ttttttgtccaaacatacaaggtgtttaat |
11210204 |
T |
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| Q |
161 |
gctaaaacacaacttcataaaagaggatgggtgtgttgtagcattgccatatatatat |
218 |
Q |
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| T |
11210205 |
gctaaaacacaccttcataaaagagggtgggtgtgttgtagcattcccatatatatat |
11210262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 17721846 - 17721915
Alignment:
| Q |
150 |
aaggtgtt-aatgctaaaacacaacttcataaaagaggatgggtgtgttgtagcattgccatatatatat |
218 |
Q |
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| T |
17721846 |
aaggtgttcaatgctaaaacacaccttcacaaaagtgagtgggtgtgttgtagcattcccatatatatat |
17721915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 18343307 - 18343401
Alignment:
| Q |
89 |
ttgcccttcattt-tacttgtttttaaaaaggaaatgttggggnnnnnnngtccaaacatccaaggtgtt-aatgctaaaacacaacttcataaaa |
182 |
Q |
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| T |
18343307 |
ttgcccttcatttctacttgtttttaaaaaggaaa-gttggggtgtttttgtccaaacaaaaaaggtgttcaatgctaaaacacaccttcataaaa |
18343401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 9801725 - 9801693
Alignment:
| Q |
186 |
gatgggtgtgttgtagcattgccatatatatat |
218 |
Q |
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| T |
9801725 |
gatgagtgtgttgtagcattgccatatatatat |
9801693 |
T |
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