View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17852_low_32 (Length: 232)
Name: NF17852_low_32
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_32 |
 | |
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| [»] chr3 (28 HSPs) |
| |
|
| [»] scaffold0640 (1 HSPs) |
| |
|
| [»] scaffold0274 (1 HSPs) |
| |
|
| [»] scaffold0648 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 19381493 - 19381262
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
19381493 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccgttggtgatatgtttgggagtccactt |
19381394 |
T |
|
| Q |
101 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19381393 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggta |
19381294 |
T |
|
| Q |
201 |
ttctttctataagattcgtaaacttatttcta |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19381293 |
ttctttctataagattcgtaaacttatttcta |
19381262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 19376222 - 19375991
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| |||||| | || |||||||||||||||||||||||||| | |
|
|
| T |
19376222 |
ttctgacaagttcttccaactatgtggaattgatccagagaaggagttgaaagacacgtcaacatgattggtcattggtgatatgtttgggagtccacct |
19376123 |
T |
|
| Q |
101 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggta |
200 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |||| | | | ||| |
|
|
| T |
19376122 |
gtgaaattattgtgatccaaatgtaacaatgaacaagaaagtgttaggttagatatgtcttcagaaattgaattgtttgacagaaaaagtacaccgcgta |
19376023 |
T |
|
| Q |
201 |
ttctttctataagattcgtaaacttatttcta |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19376022 |
ttctttctataagattcgtaaacttatttcta |
19375991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 18147424 - 18147199
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
18147424 |
caagttcttccaagtatgcggaattgatcctgagaaggagttgtaggacaaatcaacaaactcggcaattggtgatatgtttggaagtccacctgtgaaa |
18147325 |
T |
|
| Q |
107 |
ttattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggtattcttt |
206 |
Q |
| |
|
|||||| ||||| | ||| | |||||| |||||||||||||| |||||| | | ||| ||||| ||||||| ||||||||| | | |||||||| |
|
|
| T |
18147324 |
ctattgttatccaaaaataatgaggaacaattcagtgttaggttagatatgtcttctgcaatcgaattgtttgacaaaataagttcagtagatattcttt |
18147225 |
T |
|
| Q |
207 |
ctataagattcgtaaacttatttcta |
232 |
Q |
| |
|
||||||| ||| |||||||||||| |
|
|
| T |
18147224 |
ctataaggctcgagaacttatttcta |
18147199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 19393749 - 19393537
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | || |||||||| ||||||||||||||||| | | |
|
|
| T |
19393749 |
ttctgacaagttcttccaactatgtggaattgatcctgagaaggagttataagacaaatcaacccaatctgccattggagatatgtttgggagtcctcct |
19393650 |
T |
|
| Q |
101 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggta |
200 |
Q |
| |
|
||||||||||||||||||| | ||| | ||||| || ||||||||||| |||||| ||| ||| ||||| ||||||| ||||| ||| | || || |
|
|
| T |
19393649 |
gtgaaattattgtgatccaaccataaaaagaaacaatttagagttaggttagatatgtcttcagcaatcgaattgtttgacaaaataatttcaccggata |
19393550 |
T |
|
| Q |
201 |
ttctttctataag |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19393549 |
ttctttctataag |
19393537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 19414778 - 19414666
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
19414778 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaacaaactcgacaattggtgatatgtttggaagtccacctgtgaaa |
19414679 |
T |
|
| Q |
107 |
ttattgtgatcca |
119 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19414678 |
ctattgtgatcca |
19414666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 18165746 - 18165544
Alignment:
| Q |
11 |
ttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaattat |
110 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
18165746 |
ttcttccaactatgtggaattgttcctgagaaggagttgaaagacaaatcaacaaaattggccattggtgatatgtttgggagtcctcctgtgaaattat |
18165647 |
T |
|
| Q |
111 |
tgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggtattctttctat |
210 |
Q |
| |
|
||||||||| || ||| ||||| |||||||||||||| |||||| || ||| ||||| ||||||| |||||||| | | |||||||||||| |
|
|
| T |
18165646 |
tgtgatccaaacgtaagtcaaaacaatttagtgttaggttagatatgtcttcaacaatcgaattgtttgacaaaataagttgtccagttattctttctat |
18165547 |
T |
|
| Q |
211 |
aag |
213 |
Q |
| |
|
||| |
|
|
| T |
18165546 |
aag |
18165544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 19437552 - 19437346
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||| ||||||||||||||||||| | | |||| |
|
|
| T |
19437552 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaactatttgggcaattagtgatatgtttgggagtcctcctacgaaa |
19437453 |
T |
|
| Q |
107 |
ttattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggtattcttt |
206 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||| |||||| ||| ||| ||||| ||||||| | ||||||| |||||||||||| |
|
|
| T |
19437452 |
ttattgtgatccaagaataagatggaacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaactaagttcattgggtattcttt |
19437353 |
T |
|
| Q |
207 |
ctataag |
213 |
Q |
| |
|
||||||| |
|
|
| T |
19437352 |
ctataag |
19437346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 18144784 - 18144559
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| || |||||||||||||||||| | | ||||||||| ||||||||||| ||||| | ||||||| |
|
|
| T |
18144784 |
caagttcttccaactatatggaattgatcctcagaatgaattgtaagacaaatcaacataataggccattggcgatatgtttggtagtcctcctgtgaaa |
18144685 |
T |
|
| Q |
107 |
ttattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggtattcttt |
206 |
Q |
| |
|
||||||||||||| |||| | |||||| |||||||||||||| |||||| ||| ||| |||| ||||||| ||||| ||| || |||||||||| |
|
|
| T |
18144684 |
ttattgtgatccaaccttatgtacgaacaatttagtgttaggttagatatgtcttcagcaatccaattgtttgacaaaataatttcactaggtattcttt |
18144585 |
T |
|
| Q |
207 |
ctataagattcgtaaacttatttcta |
232 |
Q |
| |
|
||||||| ||| |||||||||||| |
|
|
| T |
18144584 |
ctataaggctcgagaacttatttcta |
18144559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 25463644 - 25463462
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||| ||||| ||||| | ||||||| |
|
|
| T |
25463644 |
caagttcttccaaccatgtggaattgatcctgagaaggagttgtaagacatgtcaactatttgggccattggtgatatatttggaagtcctcttgtgaaa |
25463545 |
T |
|
| Q |
107 |
ttattgtgatccagact-taaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataag |
189 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |||||| |
|
|
| T |
25463544 |
ttattgcgatcca-actctaaccatgaacaatttagtgttaggttagatatgtctccagaaatcgaattgtttgacaaaataag |
25463462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 19400320 - 19400126
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||| | ||||||| |
|
|
| T |
19400320 |
caagttcttccaactatgcggaattgatcctgagaaaaagttgtaagacaaatcaacatgatagaccattggtgatatgtttgggagtcttcctgtgaaa |
19400221 |
T |
|
| Q |
107 |
ttattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggtat |
201 |
Q |
| |
|
|||||||||||| ||||| | ||||| |||||||||||||| |||||| ||| ||| ||||| ||||||| ||||||||| ||||||| |
|
|
| T |
19400220 |
ctattgtgatccaaccttaaaattaaacaatttagtgttaggttagatatgtcttcagcaatagaattgtttgacaaaataagttcattgggtat |
19400126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 18016622 - 18016441
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| | | | | ||||||||| |||||||||||| | | |
|
|
| T |
18016622 |
ttctgacaagttcttccaactatgtggaattgatcttgagaaggagttgtaagataaatcaacaatcgcaggctttggtgataggtttgggagtcctcct |
18016523 |
T |
|
| Q |
101 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgaca |
182 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||| ||||||||||||||| || ||| ||| ||| ||||| ||||||| |
|
|
| T |
18016522 |
gtgaaattattatgatccaaccttaacaccgaacaattaagtgttaggttagatatatcttcagcaatcgaattgtttgaca |
18016441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 17942554 - 17942323
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||||| | | |
|
|
| T |
17942554 |
ttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcct |
17942455 |
T |
|
| Q |
101 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggta |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||| ||||| || |||||| ||| ||| ||||| ||||||| | || ||| |||||| |
|
|
| T |
17942454 |
gtgaaattattgtgatccaacaataaagtggaacaatttagtgtaaggttggatatgtcttcagcaatcgaattatttgacaaataaatttcattgggta |
17942355 |
T |
|
| Q |
201 |
ttctttctataagattcgtaaacttatttcta |
232 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |
|
|
| T |
17942354 |
ttctttctataaggctcgagaacttatttcta |
17942323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 14895791 - 14896021
Alignment:
| Q |
2 |
tctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatg |
101 |
Q |
| |
|
|||| |||||||||||||||||| |||||| |||||||||||||||| | |||| ||||||| || |||||||||||||||||||||||| | || |
|
|
| T |
14895791 |
tctgtcaagttcttccaactatgtggaatttctcctgagaaggagttgaatgacacatcaacatgagtggtcattggtgatatgtttgggagtcctcctg |
14895890 |
T |
|
| Q |
102 |
tgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggtat |
201 |
Q |
| |
|
||||||| |||||||||| ||||| | ||||| |||||||||||||| |||||| ||| ||| ||||| |||| || ||||||||| ||||||| |
|
|
| T |
14895891 |
tgaaattgttgtgatccaaccttaaaaacaaacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgtcaaaataagttcattgggtat |
14895990 |
T |
|
| Q |
202 |
tctttctataagattcgtaaacttatttcta |
232 |
Q |
| |
|
|||||||| ||| ||| |||||||||||| |
|
|
| T |
14895991 |
tctttctacaaggctcgagaacttatttcta |
14896021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 19334603 - 19334421
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||||||||| | || |||| |
|
|
| T |
19334603 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactacccaggccattggtgataagtttgggagtcctcttgcgaaa |
19334504 |
T |
|
| Q |
107 |
ttattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataag |
189 |
Q |
| |
|
||||||| ||||| | ||| | ||||| ||||||||||| || |||||| ||| ||| ||||| ||||||| |||||| |
|
|
| T |
19334503 |
ttattgttatccaaccataagaacaaacaatttagtgttaggttggatatgtcttcagcaatcgaattgtttgacaaaataag |
19334421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 19351992 - 19351874
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| | ||| ||| |||||||| |||||||||||| | | |
|
|
| T |
19351992 |
ttctgacaagttcttccaactatgtggaattgatcttgagaaggagttgtaagataaatcaactatctcagcctctggtgataggtttgggagtcctcct |
19351893 |
T |
|
| Q |
101 |
gtgaaattattgtgatcca |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
19351892 |
gtgaaattattgtgatcca |
19351874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 16677804 - 16677619
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggcca-ttggtgatatgtttgggagtccacatgtgaa |
105 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| | ||||| || ||||||||||||| |||||||| | |||||| |
|
|
| T |
16677804 |
caagttcttccaactatgtggaattattcccgagaaggagttgtaagacaaatcaacta-ctcgggcaattggtgatatgttcgggagtcctcctgtgaa |
16677706 |
T |
|
| Q |
106 |
attattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttc |
192 |
Q |
| |
|
|||||| ||||||| | ||||||||||||| | |||||||||||| |||||| | |||| ||||| ||||||| || |||||| |
|
|
| T |
16677705 |
attattatgatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaatggaattgtttgacaaaagaagttc |
16677619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 18103937 - 18103821
Alignment:
| Q |
10 |
gttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaa---caaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
18103937 |
gttcttccaactatgaggaattgttcctgagaaggagttgtaagacaaatcgatttcaaa---ggccattggtgatatgtttgggagtcctcctgtgaaa |
18103841 |
T |
|
| Q |
107 |
ttattgtgatccagacttaa |
126 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
18103840 |
ttattgtgatccacacttaa |
18103821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 17726943 - 17727125
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
17726943 |
caagttcttccaactatctggaattgatcctgagaaggaattgtaagacaaatcaactgttaaagccattggtgataggtttgggagtcctcctgtgaaa |
17727042 |
T |
|
| Q |
107 |
ttattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataag |
189 |
Q |
| |
|
||||||||||||| ||| | |||||| |||||||||||||| |||||| || ||||||||| ||||||| |||||| |
|
|
| T |
17727043 |
ttattgtgatccaacaataagtaggaacaaattagtgttaggttagatatgtcttcaacaattgaattgtttgacaaaataag |
17727125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 19028172 - 19028354
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
19028172 |
caagttcttccaactatctggaattgatcctgagaaggaattgtaagacaaatcaactgttaaagccattggtgataggtttgggagtcctcctgtgaaa |
19028271 |
T |
|
| Q |
107 |
ttattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataag |
189 |
Q |
| |
|
||||||||||||| ||| | |||||| |||||||||||||| |||||| || ||||||||| ||||||| |||||| |
|
|
| T |
19028272 |
ttattgtgatccaacaataagtaggaacaaattagtgttaggttagatatgtcttcaacaattgaattgtttgacaaaataag |
19028354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 17950432 - 17950317
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| | || ||||||||||||||| |||||||| | | |
|
|
| T |
17950432 |
ttctgacaagttctttaaactatgtggaattgatcctgagaaggagttgtaagaaaaatcaactctataggacattggtgatatgttcgggagtcctcct |
17950333 |
T |
|
| Q |
101 |
gtgaaattattgtgat |
116 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17950332 |
gtgaaattattgtgat |
17950317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 18873284 - 18873515
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtga------tatgtttgggagtccacat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | | | |||| ||| ||||||||||||||| | | |
|
|
| T |
18873284 |
caagttcttccaactatgtggaattgatcctgagaaggaattgtaagacaaatcaattattttctcaattgctgatccaactatgtttgggagtcctcct |
18873383 |
T |
|
| Q |
101 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggta |
200 |
Q |
| |
|
||||||||||||||||| | |||||| || ||||| ||||||| |||||| |||||| ||| ||| |||| ||||||| |||||| | |||||| |
|
|
| T |
18873384 |
gtgaaattattgtgatctaaacttaagcagaaacaatttagtgttatgttagatatgtcttcagcaatcaaattgtttgacaaaataagataattgggta |
18873483 |
T |
|
| Q |
201 |
ttctttctataagattcgtaaacttatttcta |
232 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |
|
|
| T |
18873484 |
ttctttctataaggctcgagaacttatttcta |
18873515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 18116559 - 18116353
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| | || |||||||||||||||| | ||||||| |
|
|
| T |
18116559 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattccataggcaaatgacaatatgtttgggagtcctcctgtgaaa |
18116460 |
T |
|
| Q |
107 |
ttattgtgatccagacttaaccatg-aacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggtattctt |
205 |
Q |
| |
|
|||||||||||||| ||| |||| | ||| | |||| |||||| || |||||| ||| ||||||||| ||||||| | |||||| ||||||||| |
|
|
| T |
18116459 |
ttattgtgatccagcctt-accacgtaaccaattagtgataggtttgatatgtcttcagcaattgaattgtttgacaaataaagttcaaccggtattctt |
18116361 |
T |
|
| Q |
206 |
tctataag |
213 |
Q |
| |
|
|||||||| |
|
|
| T |
18116360 |
tctataag |
18116353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 19464949 - 19464838
Alignment:
| Q |
8 |
aagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaat |
107 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
19464949 |
aagttcttccaactatatggaattgttcctgagaaggagttgtaagacaaatcaactctaaaagccattggtgatatgtttgggagtcctccagtgaaat |
19464850 |
T |
|
| Q |
108 |
tattgtgatcca |
119 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19464849 |
tattgtgatcca |
19464838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 18109036 - 18108924
Alignment:
| Q |
4 |
tgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtg |
103 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | || ||||||||||||||| | |||||| | |||| |
|
|
| T |
18109036 |
tgacaagttcttccaactatgatgaattgatcctgagaaggagttgtaagaaaaatcaactctataggacattggtgatatgttcgagagtcctcctgtg |
18108937 |
T |
|
| Q |
104 |
aaattattgtgat |
116 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
18108936 |
aaattattatgat |
18108924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 19425281 - 19425169
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| | ||||||| | ||||||| |||||||| | ||||||| |
|
|
| T |
19425281 |
caagttcttccaactatgtggaattgatcccgagaatgagttgtaagacaaatcaactgcataagccattgttaatatgttcgggagtcctcctgtgaaa |
19425182 |
T |
|
| Q |
107 |
ttattgtgatcca |
119 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
19425181 |
ttattgttatcca |
19425169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 19461781 - 19461726
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaa |
62 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19461781 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaa |
19461726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 19354307 - 19354256
Alignment:
| Q |
9 |
agttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatc |
60 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19354307 |
agttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatc |
19354256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 19439239 - 19439183
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaac |
63 |
Q |
| |
|
||||||| ||||| ||| |||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
19439239 |
caagttcctccaattatatggaattgatcttgagacggagttgtaagacaaatcaac |
19439183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 6003 - 5772
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| | |
|
|
| T |
6003 |
ttctaacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactattaaggccattgatgatatgtttgggagtcctccc |
5904 |
T |
|
| Q |
101 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggta |
200 |
Q |
| |
|
|||||||||||||||||| |||| | ||||| |||||||||||||| |||||| ||| ||| ||||| ||||||| | ||||||| ||| || |
|
|
| T |
5903 |
ttgaaattattgtgatccaaccttagaaagaaacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaattaagttcattggata |
5804 |
T |
|
| Q |
201 |
ttctttctataagattcgtaaacttatttcta |
232 |
Q |
| |
|
||||||||||| ||| |||||||||||| |
|
|
| T |
5803 |
cgctttctataaggctcgagaacttatttcta |
5772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2973 - 3204
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| | |
|
|
| T |
2973 |
ttctaacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactattaaggccattgatgatatgtttgggagtcctccc |
3072 |
T |
|
| Q |
101 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttcgctgggta |
200 |
Q |
| |
|
|||||||||||||||||| |||| | ||||| |||||||||||||| |||||| ||| ||| ||||| ||||||| | ||||||| ||| || |
|
|
| T |
3073 |
ttgaaattattgtgatccaaccttagaaagaaacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaattaagttcattggata |
3172 |
T |
|
| Q |
201 |
ttctttctataagattcgtaaacttatttcta |
232 |
Q |
| |
|
||||||||||| ||| |||||||||||| |
|
|
| T |
3173 |
cgctttctataaggctcgagaacttatttcta |
3204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 3504 - 3695
Alignment:
| Q |
1 |
ttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacat |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| | |
|
|
| T |
3504 |
ttctaacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactattaaggccattgatgatatgtttgggagtcctccc |
3603 |
T |
|
| Q |
101 |
gtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgacagaataagttc |
192 |
Q |
| |
|
|||||||||||||||||| |||| | ||||| |||||||||||||| |||||| ||| ||| ||||| ||||||| | ||||||| |
|
|
| T |
3604 |
ttgaaattattgtgatccaaccttagaaagaaacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaattaagttc |
3695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 13666356 - 13666531
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| | |||||| |
|
|
| T |
13666356 |
caagttcatccaactgtgtggaattgatcctgagaaagagttgtaagacaaatcaattatagcggccattggtgatatgtttgggagtcctcctgtgaag |
13666455 |
T |
|
| Q |
107 |
ttattgtgatccagacttaaccatgaacaagaaagtgttaggttagacatgtctacagaaattgaattctttgaca |
182 |
Q |
| |
|
||||||||||||| ||||| ||||| | ||||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
13666456 |
ttattgtgatccaaccttaagtcgaaacaattcattgttaagttagatatgtcttcagaaattgaattctttgaca |
13666531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 2709985 - 2710097
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
2709985 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaacttcaagtgccattggtgatatgtttgggagtcctcctgtaaaa |
2710084 |
T |
|
| Q |
107 |
ttattgtgatcca |
119 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
2710085 |
ttattgtggtcca |
2710097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 15536127 - 15536015
Alignment:
| Q |
7 |
caagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | | || |||||||||||||||||||||| | ||| || |
|
|
| T |
15536127 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagaaaaatcaaccataacaacccttggtgatatgtttgggagtcctcctgtataa |
15536028 |
T |
|
| Q |
107 |
ttattgtgatcca |
119 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
15536027 |
ttattgtggtcca |
15536015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 8460131 - 8460026
Alignment:
| Q |
15 |
tccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacaaactcggccattggtgatatgtttgggagtccacatgtgaaattattgtg |
114 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||| | || | | | |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
8460131 |
tccaaatatgtggaattgatcctgagaaggagttgtaagacaaatcaactaggtcagtccctactgatatgtttgggagtcctcctgtgaaattattgtg |
8460032 |
T |
|
| Q |
115 |
atccag |
120 |
Q |
| |
|
|||||| |
|
|
| T |
8460031 |
atccag |
8460026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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