View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_36 (Length: 216)
Name: NF17852_low_36
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 30927491 - 30927312
Alignment:
| Q |
19 |
atggactcaatctaaaatatacttttaaataaatggtttaaaagtatactttcaccattttttgtaaaaataaattttatattattaggaaatagaaaat |
118 |
Q |
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| T |
30927491 |
atggactcaatctaaaatagacttttaaataaatggtttaaaagtatactttcaccattttttgtaaaaataaattttatattattaggaaatagaaaat |
30927392 |
T |
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| Q |
119 |
atgtgtaatattgattacaggaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtagctagtt |
198 |
Q |
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| T |
30927391 |
atatgtaatatttattacaggaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtagctagtt |
30927312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 30919779 - 30919627
Alignment:
| Q |
42 |
tttaaataaatggtttaaaagtatactttcaccat--tttttgtaaaaataaa-ttttatattattaggaaatagaaaatatgtgtaatattgattacag |
138 |
Q |
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| T |
30919779 |
tttaaataaatggtttaaaagtatagtttcaccatattttttgtaaaattaaaattttatatta-------atagaaaatatatgtaatattgatcacat |
30919687 |
T |
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| Q |
139 |
gaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtagctagtt |
198 |
Q |
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| T |
30919686 |
gaaatcatatagggtttttagctcctttttagtatcattttagagttaaagtagctagtt |
30919627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 7784961 - 7784900
Alignment:
| Q |
134 |
tacaggaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtagcta |
195 |
Q |
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| T |
7784961 |
tacatgaaattatatagggtttttaactcctttttagagtcatattagagttaaagtggcta |
7784900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 7784253 - 7784199
Alignment:
| Q |
144 |
catatagagtttttagctcctttttagaatcatattagagttaaagtagctagtt |
198 |
Q |
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| T |
7784253 |
catatagggtttttaactcctttttagagtcatattatagttaaagtggctagtt |
7784199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 11602303 - 11602375
Alignment:
| Q |
126 |
atattgattacaggaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtagctagtt |
198 |
Q |
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| T |
11602303 |
atattgattacatgaaatcatatagggcttttagctcctttgtagagttattttagagttaaagtagcgagtt |
11602375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 17117210 - 17117265
Alignment:
| Q |
137 |
aggaaatcatatagagtttttagctcctttttagaatcatattagagttaaagtag |
192 |
Q |
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||||||||||||||||||||||| | |||||| ||| || ||||||||||||||| |
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| T |
17117210 |
aggaaatcatatagagtttttagtccatttttaaaattattttagagttaaagtag |
17117265 |
T |
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