View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_37 (Length: 211)
Name: NF17852_low_37
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 386453 - 386624
Alignment:
| Q |
25 |
cttgaagatttctcaagaagattcaacaacaacaattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaa |
124 |
Q |
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| T |
386453 |
cttgaagatttctcaagaagattcaacaacaataattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaa |
386552 |
T |
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| Q |
125 |
ataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
196 |
Q |
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| T |
386553 |
ataggaactcaagaatacaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
386624 |
T |
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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 36926447 - 36926533
Alignment:
| Q |
110 |
cgactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
196 |
Q |
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| T |
36926447 |
cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacag |
36926533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 49608358 - 49608273
Alignment:
| Q |
111 |
gactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
196 |
Q |
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||||||||||||||| | | |||||||||||||| ||||||||||||||||| ||||| ||||||| || ||||||||||||||| |
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| T |
49608358 |
gactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacag |
49608273 |
T |
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