View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17852_low_6 (Length: 371)
Name: NF17852_low_6
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17852_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 84 - 287
Target Start/End: Original strand, 5921913 - 5922116
Alignment:
| Q |
84 |
aagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatgaagaatcaagcacagaatcatgaagattcagtgaagaagatga |
183 |
Q |
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| T |
5921913 |
aagcaacaaatacatagagaacgaagcttgaagacgaagcaatcaggcacaaaaatgaagaatcaagcacataatcatgaagattcagtgaagaagatga |
5922012 |
T |
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| Q |
184 |
aggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactgataccatattaaga |
283 |
Q |
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| T |
5922013 |
aggagagagggaaaattgcagcggaagttgttagaaaaaacggttatggatcgtaacaaactccctcattgaaggagaagaaactgataccatatcaaga |
5922112 |
T |
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| Q |
284 |
gaga |
287 |
Q |
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|||| |
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| T |
5922113 |
gaga |
5922116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 83 - 303
Target Start/End: Original strand, 20326168 - 20326387
Alignment:
| Q |
83 |
gaagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatga-agaatcaagcacagaatcatgaagattcagtgaagaagat |
181 |
Q |
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|||||||||||| | |||| ||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||| |
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| T |
20326168 |
gaagcaacaaattctcagaaaacaaagcttgaagacgaagcaatcaagcacaaaaaaaagagaatcaatcacagaatcatgaagattcaatgaagaagat |
20326267 |
T |
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| Q |
182 |
gaaggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactgataccatattaa |
281 |
Q |
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| T |
20326268 |
gatggaaaaaggaaaaattgcagcggaagtagttagaaaaggttgttatggatcttaacaaactctccaattgaaggagaagaaactgataccatatta- |
20326366 |
T |
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| Q |
282 |
gagagaaagaatatgaatgaaa |
303 |
Q |
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| T |
20326367 |
-agagaaagaatatgaatgaaa |
20326387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 36164903 - 36164964
Alignment:
| Q |
247 |
ccccattggaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt |
308 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36164903 |
cccccttgaaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt |
36164964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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