View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17852_low_7 (Length: 369)

Name: NF17852_low_7
Description: NF17852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17852_low_7
NF17852_low_7
[»] chr7 (12 HSPs)
chr7 (20-325)||(47361997-47362302)
chr7 (20-325)||(47361026-47361329)
chr7 (78-200)||(11698081-11698203)
chr7 (320-369)||(10981504-10981553)
chr7 (323-369)||(27813810-27813856)
chr7 (323-368)||(25060142-25060187)
chr7 (321-368)||(2911557-2911604)
chr7 (326-369)||(36453356-36453399)
chr7 (324-369)||(25614583-25614628)
chr7 (324-369)||(40348960-40349005)
chr7 (324-369)||(47110451-47110496)
chr7 (110-158)||(11697388-11697436)
[»] chr4 (20 HSPs)
chr4 (65-200)||(3803070-3803207)
chr4 (67-197)||(35318290-35318420)
chr4 (65-200)||(48339710-48339845)
chr4 (67-161)||(52305811-52305905)
chr4 (323-369)||(12071560-12071606)
chr4 (323-369)||(14261043-14261089)
chr4 (323-369)||(21310424-21310470)
chr4 (323-369)||(25704650-25704696)
chr4 (67-161)||(35317618-35317712)
chr4 (324-369)||(34324815-34324860)
chr4 (323-368)||(40122718-40122763)
chr4 (323-369)||(22321499-22321545)
chr4 (323-369)||(24706479-24706525)
chr4 (323-368)||(21661768-21661813)
chr4 (323-368)||(21670532-21670577)
chr4 (317-369)||(44568830-44568882)
chr4 (76-140)||(48339548-48339612)
chr4 (324-366)||(20249247-20249289)
chr4 (76-156)||(12012197-12012276)
chr4 (314-350)||(53241772-53241808)
[»] chr3 (26 HSPs)
chr3 (67-197)||(7723969-7724099)
chr3 (67-197)||(7725591-7725720)
chr3 (65-160)||(23773331-23773426)
chr3 (321-368)||(12094579-12094626)
chr3 (318-368)||(3383070-3383120)
chr3 (324-369)||(198855-198900)
chr3 (76-157)||(23706903-23706984)
chr3 (76-157)||(23725359-23725440)
chr3 (76-157)||(23743815-23743896)
chr3 (323-368)||(29375137-29375182)
chr3 (324-369)||(36881282-36881327)
chr3 (322-369)||(13364841-13364888)
chr3 (323-369)||(19241900-19241946)
chr3 (324-365)||(12095423-12095464)
chr3 (323-368)||(44277464-44277509)
chr3 (324-369)||(46694342-46694387)
chr3 (324-368)||(19911509-19911553)
chr3 (324-368)||(27707397-27707441)
chr3 (322-366)||(43750135-43750179)
chr3 (323-365)||(19912174-19912216)
chr3 (323-365)||(38806341-38806383)
chr3 (324-369)||(23088163-23088208)
chr3 (331-368)||(32835189-32835226)
chr3 (322-367)||(48963154-48963199)
chr3 (324-368)||(38805245-38805289)
chr3 (324-365)||(44276775-44276816)
[»] chr6 (16 HSPs)
chr6 (314-369)||(1605569-1605624)
chr6 (321-369)||(7761298-7761346)
chr6 (321-369)||(29260189-29260237)
chr6 (110-200)||(1825459-1825547)
chr6 (323-368)||(15064927-15064972)
chr6 (315-368)||(17942434-17942487)
chr6 (323-368)||(19996724-19996769)
chr6 (324-368)||(8626482-8626526)
chr6 (322-365)||(19996320-19996363)
chr6 (323-365)||(13757207-13757249)
chr6 (331-369)||(30734715-30734753)
chr6 (67-132)||(11434558-11434623)
chr6 (324-368)||(4129435-4129479)
chr6 (330-368)||(30734841-30734879)
chr6 (322-362)||(17942682-17942722)
chr6 (320-352)||(19088192-19088224)
[»] scaffold0983 (1 HSPs)
scaffold0983 (79-200)||(1875-1996)
[»] chr8 (23 HSPs)
chr8 (321-368)||(8697907-8697954)
chr8 (322-369)||(40918961-40919008)
chr8 (322-368)||(41307970-41308016)
chr8 (324-369)||(3585451-3585496)
chr8 (324-369)||(43275629-43275674)
chr8 (324-368)||(27034997-27035041)
chr8 (324-368)||(45278710-45278754)
chr8 (318-369)||(2540163-2540214)
chr8 (323-369)||(11646557-11646603)
chr8 (323-369)||(40058535-40058581)
chr8 (71-161)||(42104407-42104497)
chr8 (323-368)||(10646591-10646636)
chr8 (324-369)||(11174455-11174500)
chr8 (324-369)||(37345571-37345616)
chr8 (324-368)||(20546520-20546564)
chr8 (324-368)||(40486462-40486506)
chr8 (324-366)||(36068080-36068122)
chr8 (71-144)||(42104510-42104583)
chr8 (324-368)||(7146913-7146957)
chr8 (67-143)||(35751622-35751698)
chr8 (71-161)||(1283337-1283426)
chr8 (331-369)||(30999753-30999791)
chr8 (323-365)||(41305761-41305803)
[»] chr1 (20 HSPs)
chr1 (321-368)||(3943057-3943104)
chr1 (324-369)||(284333-284378)
chr1 (323-368)||(9588669-9588714)
chr1 (324-369)||(23045511-23045556)
chr1 (316-369)||(40783889-40783942)
chr1 (324-368)||(41959078-41959122)
chr1 (325-368)||(27211197-27211240)
chr1 (323-365)||(44227847-44227889)
chr1 (324-369)||(321626-321671)
chr1 (324-369)||(24772137-24772182)
chr1 (324-368)||(13985000-13985044)
chr1 (323-365)||(41959809-41959851)
chr1 (324-366)||(47038085-47038127)
chr1 (324-365)||(3943763-3943804)
chr1 (322-367)||(44228238-44228283)
chr1 (331-368)||(46771644-46771681)
chr1 (323-365)||(9589631-9589673)
chr1 (322-368)||(23526238-23526284)
chr1 (311-352)||(36757473-36757514)
chr1 (316-352)||(11641059-11641095)
[»] chr2 (9 HSPs)
chr2 (323-369)||(3518907-3518953)
chr2 (323-369)||(12969971-12970017)
chr2 (114-200)||(22899920-22900006)
chr2 (324-368)||(1102503-1102547)
chr2 (325-369)||(23366790-23366834)
chr2 (324-368)||(34224387-34224431)
chr2 (324-369)||(37673969-37674014)
chr2 (324-369)||(39938170-39938215)
chr2 (324-352)||(8042022-8042050)
[»] chr5 (15 HSPs)
chr5 (73-158)||(10143125-10143210)
chr5 (324-369)||(25773649-25773694)
chr5 (324-369)||(30720724-30720769)
chr5 (324-368)||(12807086-12807130)
chr5 (324-368)||(15305221-15305265)
chr5 (74-151)||(7120882-7120959)
chr5 (323-368)||(10285290-10285335)
chr5 (323-368)||(16983257-16983302)
chr5 (322-368)||(37900857-37900903)
chr5 (324-369)||(40886842-40886887)
chr5 (321-365)||(15304819-15304863)
chr5 (313-350)||(10697022-10697059)
chr5 (67-132)||(24252335-24252400)
chr5 (79-151)||(14394667-14394739)
chr5 (324-368)||(36561332-36561376)
[»] scaffold0257 (2 HSPs)
scaffold0257 (324-368)||(23467-23511)
scaffold0257 (324-365)||(23872-23913)
[»] scaffold1431 (1 HSPs)
scaffold1431 (322-369)||(131-178)
[»] scaffold0054 (1 HSPs)
scaffold0054 (323-369)||(45453-45499)
[»] scaffold1770 (1 HSPs)
scaffold1770 (324-368)||(170-214)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 47361997 - 47362302
Alignment:
Q  20 aaacaatgttgctagtttatctatatctatatctacctctagaggatgatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatc 119  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  47361997 aaacgatgttgctagtctatctatatctatatctacctctagaggatgatgtatactatgagaacgactaacttatatgaaaatgacgagaatgatcatc 47362096  T
Q  120 aactattagattataaatagatggttgagattgaaaagtcacgtgtatacctaaccttattacatcaattctcataaactctttcatcttctctaattca 219  Q
    ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47362097 aactattagatcaaaaatagatggttgagattgaaaagtcacatgtatacctaaccttattacatcaattctcataaactctttcatcttctcgaattca 47362196  T
Q  220 ccaggttctgcaaaattatatgttgactgaattgaatctatcaataaaccaccatgttataattgattgnnnnnnnnttcttaggattcaaatttattaa 319  Q
    ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  47362197 ccatgttctgcaaaattgtatgttgactgaattgaatctatcaataaaccaccatgttataattgattgaaaaaaaattcttaggattcaaatttattaa 47362296  T
Q  320 tttata 325  Q
    ||||||    
T  47362297 tttata 47362302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 47361329 - 47361026
Alignment:
Q  20 aaacaatgttgctagtttatctatatctatatctacctctagaggatgatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatc 119  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47361329 aaacaatgttgttagtctatctatatctatatctatctctagaggatgatgtatactatgagaatgactaacttatatgaaaatgacgagaatgatcatc 47361230  T
Q  120 aactattagattataaatagatggttgagattgaaaagtcacgtgtatacctaaccttattacatcaattctcataaactctttcatcttctctaattca 219  Q
    ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47361229 aactattagatcaaaaatagatggttgagattgaaaagtcacatgtatacctaaccttattgcatcaattctcataaactctttcatcttctctaattca 47361130  T
Q  220 ccaggttctgcaaaattatatgttgactgaattgaatctatcaataaaccaccatgttataattgattgnnnnnnnnttcttaggattcaaatttattaa 319  Q
    ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  47361129 ccatgttctgc-aaattgtatgttgactgaattgaatctatcaataaaccaccatgttataattgattg-aaaaaaattcttaggattcaaatttattaa 47361032  T
Q  320 tttata 325  Q
    ||||||    
T  47361031 tttata 47361026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 11698203 - 11698081
Alignment:
Q  78 tgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcacgtgtatacctaacctt 177  Q
    ||||||||||||  |||||||| ||||  || ||||||||||||  ||||||| | ||||| |||||||||||| |||| |||| | | ||||| | |||    
T  11698203 tgagaatgactattttatatgagaatgttgagaatgatcatcaatcattagatcaaaaataaatggttgagattaaaaaatcacctatgtacctcaactt 11698104  T
Q  178 attacatcaattctcataaactc 200  Q
    |||||||||||||||||||||||    
T  11698103 attacatcaattctcataaactc 11698081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 10981504 - 10981553
Alignment:
Q  320 tttatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10981504 tttatactccctccgtttcaaaatacatgtccattttggagaaattgcac 10981553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 27813810 - 27813856
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  27813810 atactccctccgtttcaaaatacatgtccattttggagaaattgcac 27813856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 25060187 - 25060142
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  25060187 atactccctccgtttcaaaatacatgtccattttggagaaattgca 25060142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 2911604 - 2911557
Alignment:
Q  321 ttatactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||    
T  2911604 ttatactccctccatttcaaaatacatgtccattttggagaaattgca 2911557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 326 - 369
Target Start/End: Complemental strand, 36453399 - 36453356
Alignment:
Q  326 ctccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  36453399 ctccctccgtttcaaaatacatgtccattttggagaaattgcac 36453356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 25614628 - 25614583
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  25614628 tactccttccgtttcaaaatacatgtccattttggagaaattgcac 25614583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 40348960 - 40349005
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  40348960 tactccttccgtttcaaaatacatgtccattttggagaaattgcac 40349005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 47110451 - 47110496
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||    
T  47110451 tactccctccatttcaaaatacatgtccattttggagaaattgcac 47110496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 11697388 - 11697436
Alignment:
Q  110 aatgatcatcaactattagattataaatagatggttgagattgaaaagt 158  Q
    |||||||||||| |||||||| | ||||| |||||||||||| ||||||    
T  11697388 aatgatcatcaattattagatcaaaaataaatggttgagattaaaaagt 11697436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 3803070 - 3803207
Alignment:
Q  65 atgatgtatactat--gagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcacg 162  Q
    ||||||||||||||  ||||||||||| |||||||||||||||  | ||| ||||||||| | ||||| ||||||| |||| ||||||| |||||||||     
T  3803070 atgatgtatactataagagaatgactatcttatatgaaaatgataagaataatcatcaaccaatagatcataaataaatggatgagattaaaaagtcaca 3803169  T
Q  163 tgtatacctaaccttattacatcaattctcataaactc 200  Q
    | | ||||| ||||||||| ||||||||||||||||||    
T  3803170 tatgtacctcaccttattatatcaattctcataaactc 3803207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 35318420 - 35318290
Alignment:
Q  67 gatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcacgtgta 166  Q
    |||||||| |||||||||||||| ||||||| | ||||  || ||||||||||||| ||||||||| ||||| |||||||||||| ||||||||| | |     
T  35318420 gatgtataatatgagaatgactatcttatataagaatggtgagaatgatcatcaaccattagattaaaaataaatggttgagattaaaaagtcacatatg 35318321  T
Q  167 tacctaaccttattacatcaattctcataaa 197  Q
     |||| || |||||| || ||||||||||||    
T  35318320 cacctcactttattatataaattctcataaa 35318290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 48339845 - 48339710
Alignment:
Q  65 atgatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcacgtg 164  Q
    ||||||| || |||||||||||||| || | |||| ||||   | ||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |     
T  48339845 atgatgtttattatgagaatgactatctcacatgagaatgtttagaatgatcatcaaccattagatcataaatagatggttgagattaaaaagtcacata 48339746  T
Q  165 tatacctaaccttattacatcaattctcataaactc 200  Q
    ||||||  || |||||| |||| | |||||||||||    
T  48339745 tataccacactttattatatcagtcctcataaactc 48339710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 52305811 - 52305905
Alignment:
Q  67 gatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcac 161  Q
    |||||||||| |||||||||| | ||||||||| ||||| || ||||||||||||| ||||||||| ||||| |||||||||||| |||| ||||    
T  52305811 gatgtatactgtgagaatgacaatcttatatgagaatgatgagaatgatcatcaaccattagattaaaaataaatggttgagattaaaaactcac 52305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 12071560 - 12071606
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  12071560 atactccctccgtttcaaaatacatgtccattttggagaaattgcac 12071606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 14261043 - 14261089
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  14261043 atactccctccgtttcaaaatacatgtccattttggagaaattgcac 14261089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 21310424 - 21310470
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  21310424 atactccctccgtttcaaaatacatgtccattttggagaaattgcac 21310470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 25704650 - 25704696
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  25704650 atactccctccgtttcaaaatacatgtccattttggagaaattgcac 25704696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 35317618 - 35317712
Alignment:
Q  67 gatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcac 161  Q
    |||||||| |||||||||||||| ||||||||| ||||  |||||||||||||||| |||| || |  |||| || ||||||||| |||||||||    
T  35317618 gatgtataatatgagaatgactatcttatatgagaatggtgaaaatgatcatcaaccattaaatcaataataaatagttgagattaaaaagtcac 35317712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 34324860 - 34324815
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  34324860 tactccctccgtttcaaaatacatgtccattttggagaaattgcac 34324815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 40122763 - 40122718
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  40122763 atactccctccgtttcaaaatacatgtccattttggagaaattgca 40122718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 22321545 - 22321499
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  22321545 atactccttccgtttcaaaatacatgtccattttggagaaattgcac 22321499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 24706525 - 24706479
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  24706525 atactccatccgtttcaaaatacatgtccattttggagaaattgcac 24706479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 21661813 - 21661768
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  21661813 atactccctccctttcaaaatacatgtccattttggagaaattgca 21661768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 21670577 - 21670532
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  21670577 atactccctccctttcaaaatacatgtccattttggagaaattgca 21670532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 44568830 - 44568882
Alignment:
Q  317 taatttatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||| ||||||| |||||||||||||| |||||||||||| |||||||||||    
T  44568830 taattcatactccttccgtttcaaaatacatgtccattttgaagaaattgcac 44568882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 48339548 - 48339612
Alignment:
Q  76 tatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaataga 140  Q
    |||||||||||||| ||||||||| ||||| || |||||| ||||||  |||||| |||||||||    
T  48339548 tatgagaatgactatcttatatgagaatgatgagaatgattatcaaccgttagatcataaataga 48339612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 20249289 - 20249247
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattg 366  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||    
T  20249289 tactctctccgtttcaaaatacatgtccattttggataaattg 20249247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 12012197 - 12012276
Alignment:
Q  76 tatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaa 156  Q
    |||||||||| ||| ||||||||| ||||| || ||| |   |||||| ||||||| ||||||||||||||||||| ||||    
T  12012197 tatgagaatgcctatcttatatgagaatgatgagaataaatctcaactgttagatt-taaatagatggttgagattaaaaa 12012276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 53241772 - 53241808
Alignment:
Q  314 tattaatttatactccctccgtttcaaaatatatgtc 350  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  53241772 tattagtttatactctctccgtttcaaaatatatgtc 53241808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 7723969 - 7724099
Alignment:
Q  67 gatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcacgtgta 166  Q
    |||||||| |||||||||||||| ||||||||| ||||  || ||||||||||||| ||||||| |  |||| |||||||||||| ||||||||| | |     
T  7723969 gatgtataatatgagaatgactatcttatatgagaatggtgagaatgatcatcaaccattagatcaataataaatggttgagattaaaaagtcacatatg 7724068  T
Q  167 tacctaaccttattacatcaattctcataaa 197  Q
    ||| | || |||||| || ||||||||||||    
T  7724069 tacttcactttattatataaattctcataaa 7724099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 7725720 - 7725591
Alignment:
Q  67 gatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcacgtgta 166  Q
    |||||||| |||||||||||||| ||||||||| ||||  |  ||||||||||||| ||||||| | ||||| |||||||||||| ||||||||| | |     
T  7725720 gatgtatagtatgagaatgactatcttatatgagaatggtgtgaatgatcatcaaccattagatcaaaaata-atggttgagattaaaaagtcacatatg 7725622  T
Q  167 tacctaaccttattacatcaattctcataaa 197  Q
     |||| || |||||| |||||||||||||||    
T  7725621 cacctcactttattatatcaattctcataaa 7725591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 23773331 - 23773426
Alignment:
Q  65 atgatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtca 160  Q
    |||||||||  |||||||||||||| ||||||||||||||| |||||| || | |||| |||| || | |||||||||||||||||| ||||||||    
T  23773331 atgatgtatcatatgagaatgactatcttatatgaaaatgatgaaaataattaccaaccattaaataaaaaatagatggttgagattaaaaagtca 23773426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 12094579 - 12094626
Alignment:
Q  321 ttatactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  12094579 ttatactccctccgtttcaaaatacatgtccattttggagaaattgca 12094626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 3383070 - 3383120
Alignment:
Q  318 aatttatactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  3383070 aattaatactccttccgtttcaaaatatatgtccattttggagaaattgca 3383120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 198855 - 198900
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  198855 tactccctccgtttcaaaatacatgtccattttggagaaattgcac 198900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 23706903 - 23706984
Alignment:
Q  76 tatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaag 157  Q
    |||||||||||||| ||||||||||||||| |||||| || | |||| |||| || | |||||||||||||||||| |||||    
T  23706903 tatgagaatgactatcttatatgaaaatgatgaaaataattaccaaccattaaataaaaaatagatggttgagattaaaaag 23706984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 23725359 - 23725440
Alignment:
Q  76 tatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaag 157  Q
    |||||||||||||| ||||||||||||||| |||||| || | |||| |||| || | |||||||||||||||||| |||||    
T  23725359 tatgagaatgactatcttatatgaaaatgatgaaaataattaccaaccattaaataaaaaatagatggttgagattaaaaag 23725440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 23743815 - 23743896
Alignment:
Q  76 tatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaag 157  Q
    |||||||||||||| ||||||||||||||| |||||| || | |||| |||| || | |||||||||||||||||| |||||    
T  23743815 tatgagaatgactatcttatatgaaaatgatgaaaataattaccaaccattaaataaaaaatagatggttgagattaaaaag 23743896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 29375137 - 29375182
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  29375137 atactccctccgtttcaaaatacatgtccattttggagaaattgca 29375182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 36881282 - 36881327
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  36881282 tactccctccgtttcaaaatacatgtccattttggagaaattgcac 36881327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 13364841 - 13364888
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  13364841 tatactccctccgtttcaaaatacatgttcattttggagaaattgcac 13364888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 19241946 - 19241900
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  19241946 atactccctccgtttcaaaatacatgtccattttggtgaaattgcac 19241900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 12095464 - 12095423
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  12095464 tactccctccgtttcaaaatatatgtccattttagagaaatt 12095423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 44277509 - 44277464
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||    
T  44277509 atactccctccgtttcaaaatacatgtctattttggagaaattgca 44277464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 46694387 - 46694342
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  46694387 tactccctccgtttcaaaatacatgtcctttttggagaaattgcac 46694342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 19911509 - 19911553
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  19911509 tactccctccgtttcaaaatacatgttcattttggagaaattgca 19911553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 27707441 - 27707397
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  27707441 tactccctccgtttcgaaatacatgtccattttggagaaattgca 27707397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 43750135 - 43750179
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaattg 366  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  43750135 tatactcccttcgtttcaaaatacatgtccattttggagaaattg 43750179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 19912216 - 19912174
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    |||||||||||||||||||||| ||||||||||| ||||||||    
T  19912216 atactccctccgtttcaaaatacatgtccattttagagaaatt 19912174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 38806383 - 38806341
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    |||||||||||||||||||||| ||||||||||| ||||||||    
T  38806383 atactccctccgtttcaaaatacatgtccattttagagaaatt 38806341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 23088208 - 23088163
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||    
T  23088208 tactccctctgtttcaaaatatatgtctattttgaagaaattgcac 23088163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 32835226 - 32835189
Alignment:
Q  331 tccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32835226 tccgtttcaaaatacatgtccattttggagaaattgca 32835189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 48963154 - 48963199
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaattgc 367  Q
    ||||||||||||||||||||||| || || ||||||||||||||||    
T  48963154 tatactccctccgtttcaaaatacatatctattttggagaaattgc 48963199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 38805245 - 38805289
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||| |||||| ||||||||||| |||||||||||    
T  38805245 tactccctccgttttaaaatacatgtccattttagagaaattgca 38805289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 44276775 - 44276816
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||    
T  44276775 tactctctccgtttcaaaatacatgtccattttagagaaatt 44276816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 1605569 - 1605624
Alignment:
Q  314 tattaatttatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1605569 tatttatttatactccctccgtttcaaaatacatgtccattttggagaaattgcac 1605624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 7761298 - 7761346
Alignment:
Q  321 ttatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7761298 ttatactccctccgtttcaaaatacatgtccattttggagaaattgcac 7761346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 29260189 - 29260237
Alignment:
Q  321 ttatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29260189 ttatactccctccgtttcaaaatacatgtccattttggagaaattgcac 29260237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 1825547 - 1825459
Alignment:
Q  110 aatgatcatcaactattagattataaatagatggttgagattgaaaagtcacgtgtatacctaaccttattacatcaattctcataaactc 200  Q
    |||||| |||||| ||||||||  ||||| |||||||| ||| ||||||||| |  |||||| ||||||||| ||||||||||||||||||    
T  1825547 aatgattatcaaccattagattcaaaataaatggttgacattaaaaagtcacat--atacctcaccttattagatcaattctcataaactc 1825459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 15064972 - 15064927
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||    
T  15064972 atactccctccgtttcaaaatacatgtccattttagagaaattgca 15064927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 17942434 - 17942487
Alignment:
Q  315 attaatttatactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||| |||||||||| |||||||||||| ||||||||||| |||||||||||    
T  17942434 attaatatatactcccttcgtttcaaaatacatgtccatttttgagaaattgca 17942487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 19996769 - 19996724
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||    
T  19996769 atactccctccgtttcaaaatacatgtctattttggagaaattgca 19996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 8626482 - 8626526
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  8626482 tactccctccgtttcaaaatacatgtccattttgaagaaattgca 8626526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 19996320 - 19996363
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  19996320 tatactccctccgtttcaaaatacatgtccattttagagaaatt 19996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 13757207 - 13757249
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  13757207 atactctctccgtttcaaaatacatgtccattttggagaaatt 13757249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 30734753 - 30734715
Alignment:
Q  331 tccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30734753 tccgtttcaaaatacatgtccattttggagaaattgcac 30734715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 11434558 - 11434623
Alignment:
Q  67 gatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagatta 132  Q
    |||||||| |||||||||||||| ||||||||| ||| | || ||| ||||||||||||| |||||    
T  11434558 gatgtataatatgagaatgactatcttatatgagaattatgagaataatcatcaactatttgatta 11434623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 4129435 - 4129479
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| || |||| |||||||||||||||    
T  4129435 tactccctccgtttcaaaatacatatccactttggagaaattgca 4129479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 30734879 - 30734841
Alignment:
Q  330 ctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  30734879 ctccgtttcaaaatacatgtccattttgaagaaattgca 30734841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 17942722 - 17942682
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaa 362  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  17942722 tatactccctccgtttcataatacttgtccattttggagaa 17942682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 19088224 - 19088192
Alignment:
Q  320 tttatactccctccgtttcaaaatatatgtcca 352  Q
    ||||||||||||||||||||||||| |||||||    
T  19088224 tttatactccctccgtttcaaaatacatgtcca 19088192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 1996 - 1875
Alignment:
Q  79 gagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcacgtgtatacctaacctta 178  Q
    |||||||| ||| |||||||| ||||  || ||||||||||||| |||| |||| ||||| |||||||||||| ||||  ||| | |  |||| ||||||    
T  1996 gagaatgaataatttatatgagaatggtgataatgatcatcaaccattaaattaaaaataaatggttgagattaaaaacacacatatgcacctcacctta 1897  T
Q  179 ttacatcaattctcataaactc 200  Q
    ||| ||||||||||||||||||    
T  1896 ttatatcaattctcataaactc 1875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 8697954 - 8697907
Alignment:
Q  321 ttatactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  8697954 ttatactccctccgtttcaaaatacatgtccattttggagaaattgca 8697907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 40919008 - 40918961
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40919008 tatactccctccgtttcaaaatacatgtccattttggagaaattgcac 40918961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 41308016 - 41307970
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  41308016 tatactccctccgtttcaaaatacatgtccattttggagaaattgca 41307970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 3585451 - 3585496
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3585451 tactccctccgtttcaaaatacatgtccattttggagaaattgcac 3585496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 43275674 - 43275629
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  43275674 tactccctccgtttcaaaatacatgtccattttggagaaattgcac 43275629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 27034997 - 27035041
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  27034997 tactccctccgtttcaaaatacatgtccattttggagaaattgca 27035041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 45278754 - 45278710
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  45278754 tactccctccgtttcaaaatacatgtccattttggagaaattgca 45278710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 2540214 - 2540163
Alignment:
Q  318 aatttatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  2540214 aattaatacttcctccgtttcaaaatacatgtccattttggagaaattgcac 2540163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 11646603 - 11646557
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11646603 atactcccttcgtttcaaaatacatgtccattttggagaaattgcac 11646557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 40058581 - 40058535
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  40058581 atactccctccgtttcaaaatacatgtccatttcggagaaattgcac 40058535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 42104407 - 42104497
Alignment:
Q  71 tatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcac 161  Q
    |||||||||||||||| ||  |||||||| ||||| || |||||| |||||| ||||||| | ||||| ||||||| |||| |||||||||    
T  42104407 tatactatgagaatgagtactttatatgagaatgatgagaatgattatcaaccattagatcaaaaataaatggttgtgattaaaaagtcac 42104497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 10646591 - 10646636
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||    
T  10646591 atacttcctccgtttcaaaatacatgtccattttggagaaattgca 10646636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 11174500 - 11174455
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  11174500 tactccctccgtttcaaaatacatgttcattttggagaaattgcac 11174455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 37345571 - 37345616
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||    
T  37345571 tactccctccgtttcaaaatacatgtccattttgaagaaattgcac 37345616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 20546564 - 20546520
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  20546564 tactccctccatttcaaaatatatgtccattttgaagaaattgca 20546520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 40486506 - 40486462
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  40486506 tactccctccgtttcaaaatacatgtccattttgaagaaattgca 40486462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 36068080 - 36068122
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattg 366  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  36068080 tactccctccgtttcaaaatacatgtccattttggaggaattg 36068122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 42104583 - 42104510
Alignment:
Q  71 tatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggt 144  Q
    |||||| ||||||||||||  |||||||| ||||| || |||||| |||||||||||||| | ||||| |||||    
T  42104583 tatactgtgagaatgactactttatatgagaatgatgagaatgattatcaactattagatcaaaaataaatggt 42104510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 7146913 - 7146957
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||| |||||||||||||| |||||||||||| ||||||||||    
T  7146913 tactccttccgtttcaaaatacatgtccattttgaagaaattgca 7146957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 35751698 - 35751622
Alignment:
Q  67 gatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatgg 143  Q
    |||||||  ||||||||||||||  |||||||| ||||| || |||||| ||  |||||||||||| ||||||||||    
T  35751698 gatgtatcttatgagaatgactattttatatgagaatgatgagaatgattatggactattagattaaaaatagatgg 35751622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 1283337 - 1283426
Alignment:
Q  71 tatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagtcac 161  Q
    |||||||||||||||||||  |||||||| ||||| || ||| || |||||  |||||| || ||| ||||| |||||||| |||||||||    
T  1283337 tatactatgagaatgactattttatatgagaatgatgagaataattatcaatcattaga-taaaaaaagatgattgagattaaaaagtcac 1283426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 30999791 - 30999753
Alignment:
Q  331 tccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  30999791 tccgtttcaaaatacatgtcaattttggagaaattgcac 30999753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 41305761 - 41305803
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||    
T  41305761 atactctctccgtttcaaaatacatgtccattttagagaaatt 41305803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 3943057 - 3943104
Alignment:
Q  321 ttatactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  3943057 ttatactccctccgtttcaaaatacatgtccattttggagaaattgca 3943104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 284333 - 284378
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  284333 tactccctccgtttcaaaatacatgtccattttggagaaattgcac 284378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 9588669 - 9588714
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  9588669 atactccctccgtttcaaaatacatgtccattttggagaaattgca 9588714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 23045556 - 23045511
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  23045556 tactccctccgtttcaaaatacatgtccattttggagaaattgcac 23045511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 40783942 - 40783889
Alignment:
Q  316 ttaatttatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||||||||    
T  40783942 ttaattgatactccctccgtttcaaaatacatgttcattttggagaaattgcac 40783889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 41959078 - 41959122
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  41959078 tactccctccgtttcaaaatacatgtccattttggagaaattgca 41959122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 27211240 - 27211197
Alignment:
Q  325 actccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  27211240 actccctccgtttcaaaatacatgtccattttggagaaattgca 27211197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 44227847 - 44227889
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  44227847 atactccctccgtttcaaaatacatgtccattttggagaaatt 44227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 321626 - 321671
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  321626 tactccctccgtttcaaaatacatgttcattttggagaaattgcac 321671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 24772182 - 24772137
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||    
T  24772182 tactccctccgtttcaaaatacatgtccattttgaagaaattgcac 24772137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 13985044 - 13985000
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  13985044 tactccatccgtttcaaaatacatgtccattttggagaaattgca 13985000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 41959851 - 41959809
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    |||||||||||||||||||||| ||||||||||| ||||||||    
T  41959851 atactccctccgtttcaaaatacatgtccattttagagaaatt 41959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 47038127 - 47038085
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattg 366  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  47038127 tactccatccgtttcaaaatacatgtccattttggagaaattg 47038085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 3943804 - 3943763
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  3943804 tactccctccgtttcaaaatacatgtccattttagagaaatt 3943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 44228283 - 44228238
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaattgc 367  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||    
T  44228283 tatactacctccatttcaaaatacatgtccattttggagaaattgc 44228238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 46771644 - 46771681
Alignment:
Q  331 tccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||| |||||||||||||||||||||||    
T  46771644 tccgtttcaaaatacatgtccattttggagaaattgca 46771681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 9589673 - 9589631
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||    
T  9589673 atactccctccgtttcaaaatacatgtctattttagagaaatt 9589631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 23526238 - 23526284
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||| ||| |||||||||| |||| ||||||||||||||||||    
T  23526238 tatactccttccatttcaaaatacatgttcattttggagaaattgca 23526284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 36757473 - 36757514
Alignment:
Q  311 atttattaatttatactccctccgtttcaaaatatatgtcca 352  Q
    |||||||| | ||||||||||||||||||||||| |||||||    
T  36757473 atttattagtatatactccctccgtttcaaaatacatgtcca 36757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 11641059 - 11641095
Alignment:
Q  316 ttaatttatactccctccgtttcaaaatatatgtcca 352  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  11641059 ttaatatatactccctccgtttcaaaatacatgtcca 11641095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 3518907 - 3518953
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  3518907 atactccctccgtttcaaaatacatgtccattttggagaaattgcac 3518953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 12970017 - 12969971
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  12970017 atactccctccgtttcaaaatacatgtccattttggagaaattgcac 12969971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 22900006 - 22899920
Alignment:
Q  114 atcatcaactattagattataaatagatggttgagattgaaaagtcacgtgtatacctaaccttattacatcaattctcataaactc 200  Q
    ||||||||| ||||| | | ||||| |||||||||||| ||| ||||  | ||||| ||||||||||||||||||||||||||||||    
T  22900006 atcatcaaccattagctaaaaaataaatggttgagattaaaatgtcaaatatatacttaaccttattacatcaattctcataaactc 22899920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 1102503 - 1102547
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  1102503 tactccctccgtttcaaaatacatgtccattttggagaaattgca 1102547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 23366790 - 23366834
Alignment:
Q  325 actccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  23366790 actccctccgtttcaaaatacatgtccattttggagaaattgcac 23366834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 34224431 - 34224387
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  34224431 tactccctccgtttcaaaatacatgtccattttggagaaattgca 34224387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 37674014 - 37673969
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  37674014 tactccctccgtttcaaaatacatgttcattttggagaaattgcac 37673969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 39938170 - 39938215
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  39938170 tactccctccgtttcaaaatacatgaccattttggagaaattgcac 39938215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 352
Target Start/End: Original strand, 8042022 - 8042050
Alignment:
Q  324 tactccctccgtttcaaaatatatgtcca 352  Q
    |||||||||||||||||||||||||||||    
T  8042022 tactccctccgtttcaaaatatatgtcca 8042050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 10143210 - 10143125
Alignment:
Q  73 tactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagattgaaaagt 158  Q
    ||||||||||||||||| |||||||   ||||| |  ||| || |||||||||||||||| |||||||||||||||||| ||||||    
T  10143210 tactatgagaatgactatcttatatatgaatgatgggaataattatcaactattagattaaaaatagatggttgagattaaaaagt 10143125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 25773649 - 25773694
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  25773649 tactccctccgtttcaaaatacatgtccattttggagaaattgcac 25773694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 30720769 - 30720724
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30720769 tactccctccgtttcaaaatacatgtccattttggagaaattgcac 30720724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 12807130 - 12807086
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  12807130 tactccctccgtttcaaaatacatgtccattttggagaaattgca 12807086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 15305265 - 15305221
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  15305265 tactccctccgtttcaaaatacatgtccattttggagaaattgca 15305221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 7120959 - 7120882
Alignment:
Q  74 actatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagatt 151  Q
    ||||||||||||||||  |||||||||||||  || ||||||||||||| || | || | ||||||||||||||||||    
T  7120959 actatgagaatgactattttatatgaaaatggtgagaatgatcatcaaccatcatatcaaaaatagatggttgagatt 7120882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 10285335 - 10285290
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||    
T  10285335 atactccctccgtttcaaaatagatgtctattttggagaaattgca 10285290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 16983257 - 16983302
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||    
T  16983257 atactccctctgtttcaaaatacatgtccattttggagaaattgca 16983302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 37900903 - 37900857
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||    
T  37900903 tatactccctccgtttcaaaatacacatccattttggagaaattgca 37900857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 40886887 - 40886842
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||    
T  40886887 tactccatccgtttcaaaatacatgttcattttggagaaattgcac 40886842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 15304819 - 15304863
Alignment:
Q  321 ttatactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  15304819 ttatactccctccgttttaaaatacatgtccattttagagaaatt 15304863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 10697059 - 10697022
Alignment:
Q  313 ttattaatttatactccctccgtttcaaaatatatgtc 350  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  10697059 ttatttatttatactccatccgtttcaaaatatatgtc 10697022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 24252400 - 24252335
Alignment:
Q  67 gatgtatactatgagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagatta 132  Q
    ||||| ||||||||||||||||| ||||||| | ||||  ||||||||| |||||| ||| |||||    
T  24252400 gatgtttactatgagaatgactatcttatataagaatggtgaaaatgattatcaaccatttgatta 24252335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 14394667 - 14394739
Alignment:
Q  79 gagaatgactaacttatatgaaaatgacgaaaatgatcatcaactattagattataaatagatggttgagatt 151  Q
    ||||||||||| ||||||||| ||||  || ||| || |||||  ||||||| | ||||||||||||||||||    
T  14394667 gagaatgactatcttatatgagaatggtgataataattatcaatcattagataaaaaatagatggttgagatt 14394739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 36561376 - 36561332
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    |||||| |||||||||||||| ||||||||||| || ||||||||    
T  36561376 tactccatccgtttcaaaatacatgtccattttagaaaaattgca 36561332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 23467 - 23511
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  23467 tactccctccgtttcaaaatacatgtccattttggagaaattgca 23511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 23913 - 23872
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaatt 365  Q
    |||||| |||||||||||||| ||||||||||| ||||||||    
T  23913 tactccatccgtttcaaaatacatgtccattttagagaaatt 23872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 178 - 131
Alignment:
Q  322 tatactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  178 tatactctctccgtttcaaaatacatgtccattttggagaaattgcac 131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 45453 - 45499
Alignment:
Q  323 atactccctccgtttcaaaatatatgtccattttggagaaattgcac 369  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||    
T  45453 atactccctccgtttcaaaatacatgttcattttggagaaattgcac 45499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 170 - 214
Alignment:
Q  324 tactccctccgtttcaaaatatatgtccattttggagaaattgca 368  Q
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T  170 tactccctccgtttcaaaatacatatccactttggagaaattgca 214  T

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