View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_high_1 (Length: 637)
Name: NF17853_high_1
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 17 - 627
Target Start/End: Complemental strand, 31709883 - 31709273
Alignment:
| Q |
17 |
aaaaaccattcgatatgccatctaaaaaacagtgtactgagaagacagtcggtgaaaccgttgtcagggaccaatatttatctcatatttctttaatcca |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31709883 |
aaaaaccattcgatatgccatctaaaaaacagtgtactgagaagacagtcggtgaaaccgttgtcaaggaccaatatttatctcatatttctttaatcca |
31709784 |
T |
|
| Q |
117 |
gtaacaattaaaggatcgaatcaagagccaatgcaacaggtaaaattatactatattttcattacaaagactgatagaaagttcaatatcatactaatac |
216 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31709783 |
gtaacaataaaaggatcgaatcaagagccaatgcaacaggtaaaattatactatattttcattacaaagactgatagaaagttcaatatcatactaatac |
31709684 |
T |
|
| Q |
217 |
ctgacaatttcttttccgtatgtttcagcagccttttcaagctgtgactcacttaaacttagacgtctcactttatcaggctccactttgagacattcca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31709683 |
ctgacaatttcttttccgtatgtttcagcagccttttcaagctgtgactcacttaaacttagacgtctcactttatcaggctccactttgagacattcca |
31709584 |
T |
|
| Q |
317 |
ctattccacctttaggcttcccagcatgtatagcaattaagcgtctgtagtcatctgatgtattttgccgtgacgcttcatcggaatcttcctcctcctt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31709583 |
ctattccacctttaggcttcccagcatgtatagcaattaagcgtctgtagtcatctgatgtattttgccgtgacgcttcatcggaatcttcctcctcctt |
31709484 |
T |
|
| Q |
417 |
aagatcatcttcatcgataccactgttttgctgaagatagaaagcaataaaaatgaaccaaccaatctcacatacaaaattaaatgtccttgaaatttat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31709483 |
aagatcatcttcatcgataccactgttttgctgaagatagaaagcaataaaaatgaaccaaccaatctcacatacaaaattaaatgtccttgaaatttat |
31709384 |
T |
|
| Q |
517 |
atacaacattgagcaagtatcagaccttgtaatcagctatagtaccgcctcttaaactagggacttctttgccccaagcttcttcatcacctaaaggctt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31709383 |
atacaacattgagcaagtatcagaccttgtaatcagctatagtaccgcctcttaaacttgggacttctttgccccaagcttcttcatcacctaaaggctt |
31709284 |
T |
|
| Q |
617 |
tcccttctgtg |
627 |
Q |
| |
|
||||||||||| |
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| T |
31709283 |
tcccttctgtg |
31709273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 56 - 627
Target Start/End: Original strand, 31011478 - 31012055
Alignment:
| Q |
56 |
agaagacagtcggtgaaaccgttgtcagggaccaatatttatctcatatttctttaatccagtaacaattaaaggatcgaatcaagagccaatgcaacag |
155 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||| |||| ||||||||||| |
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|
| T |
31011478 |
agaagacagttggtgaaaccattgtcaaggacaaatatttatctcatatttctttaatccggtaacaataaaaggattgaatccagagtcaatgcaacag |
31011577 |
T |
|
| Q |
156 |
gtaaaattatactatattttcattacaaagactgatagaaagttcaatatcatactaatacctgacaatttcttttccgtatgtttcagcagccttttca |
255 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31011578 |
gtaaaattatactacattttcattacaaagacttgtagaaagttcaatatcatactaatacctgacaatttcttttccatatgtttcagcagccttttcg |
31011677 |
T |
|
| Q |
256 |
agctgtgactcacttaaacttagacgtctcactttatcaggctccactttgagacattccactattccacctttaggcttcccagcatgtatagcaatta |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
31011678 |
agctgtgactcacttaaacttagacgtctcactttatcaggctccactttgagacattccactattccacctttaggcttcccagcatgaatagcaatta |
31011777 |
T |
|
| Q |
356 |
agcgtctgtagtcatctgatgtattttgccgtg------acgcttcatcggaatcttcctcctccttaagatcatcttcatcgataccactgttttgctg |
449 |
Q |
| |
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||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
31011778 |
agcatctgtagtcatctgatgcattttggcgtgccttttccgcttcatcggaatcttcctcctccttaagatcatcttcatcgacaccactgttttgcta |
31011877 |
T |
|
| Q |
450 |
aagatagaaagcaataaaaatgaaccaaccaatctcacatacaaaattaaatgtccttgaaatttatatacaacattgagcaagtatcagaccttgtaat |
549 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
31011878 |
aatatagaaagcaataaaaatgaaccaaccaatctcacaaaaaaaattagatgtccttgcaatttatatacaacattgagcaaatatcagaccttgtaat |
31011977 |
T |
|
| Q |
550 |
cagctatagtaccgcctcttaaactagggacttctttgccccaagcttcttcatcacctaaaggctttcccttctgtg |
627 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31011978 |
cagctatagtaccgcctctcaaactagggacttctttgccccaagcttcttcatcacctaaaggctttcccttctgtg |
31012055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 31719931 - 31719847
Alignment:
| Q |
267 |
acttaaacttagacgtctcactttatcaggctccactttgagacattccactattccacctttaggcttcccagcatgtatagca |
351 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||| |||||| |
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|
| T |
31719931 |
acttaaacttagacatctcactttatcaggttccactttgagacattcctctattcaatctttaggcttcccagcatgaatagca |
31719847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 213 - 356
Target Start/End: Complemental strand, 35551713 - 35551570
Alignment:
| Q |
213 |
atacctgacaatttcttttccgtatgtttcagcagccttttcaagctgtgactcacttaaacttagacgtctcactttatcaggctccactttgagacat |
312 |
Q |
| |
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||||||||||| ||||||||| | ||| ||||||||||||||||||| |||||||||||||| ||| ||| |||| || || || | |||||| ||| |
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|
| T |
35551713 |
atacctgacaacttcttttccatgagttatagcagccttttcaagctgttgctcacttaaacttatacgcctcgctttctccggatctattttgagccat |
35551614 |
T |
|
| Q |
313 |
tccactattccacctttaggcttcccagcatgtatagcaattaa |
356 |
Q |
| |
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| ||||||| ||||| | |||||||||||| || |||||||| |
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|
| T |
35551613 |
gcgtctattcctcctttcgacttcccagcatgaatggcaattaa |
35551570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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