View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17853_high_11 (Length: 328)

Name: NF17853_high_11
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17853_high_11
NF17853_high_11
[»] chr8 (2 HSPs)
chr8 (21-313)||(27274972-27275260)
chr8 (64-233)||(29712693-29712860)
[»] chr4 (1 HSPs)
chr4 (64-233)||(55802593-55802760)
[»] chr6 (2 HSPs)
chr6 (102-193)||(4123700-4123791)
chr6 (102-253)||(4131343-4131490)
[»] chr1 (2 HSPs)
chr1 (118-159)||(23900179-23900220)
chr1 (146-219)||(23900134-23900206)
[»] chr5 (1 HSPs)
chr5 (23-58)||(39947718-39947753)
[»] chr2 (1 HSPs)
chr2 (22-64)||(25406523-25406565)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 27275260 - 27274972
Alignment:
Q  21 ggtagcataaatttctcaacaaactactctttatatttaaaaatactagacgtctacccgtgcgacatgcacgagcaatatttatagaattattcttaat 120  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    ||||||||| ||||||||||||||||||||||||||    
T  27275260 ggtagcataaatttctcaacaaattactctttatatttaaaaatactagacgtctaaccg----acatgcacgggcaatatttatagaattattcttaat 27275165  T
Q  121 aatcggtgtacttaaatatattgttttaaatatattggtgtgaataatattggtcgcgctttcaatttagaccttnnnnnnntaggtgcttgagtatttc 220  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  27275164 aatcggtgtacttaaatatattgtcttgaatatattggtgtgaataatattggtcgcgctttcaatttagaccttaaaaaaataggtgcttgagtatttc 27275065  T
Q  221 aaagagttatttttagtgagttcttgatataaaagtgatatggtaggaaactaattagattggnnnnnnnggacgtgttgcattagtgactag 313  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  27275064 aaagagttatttttagtgagttcttcatataaaagtgatatggtaggaaactaattagattggtttttttggacgtgttgcattagtgactag 27274972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 64 - 233
Target Start/End: Original strand, 29712693 - 29712860
Alignment:
Q  64 tactagacgtctacccgtgcgacatgcacgagcaatatttatagaattattcttaataatcggtgtac-ttaaatatattgttttaaatatattggtgtg 162  Q
    ||||||||||||||||||||||||  ||    ||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||  |||||    
T  29712693 tactagacgtctacccgtgcgaca--caaatacaatatttatagaattattcttaataatctgtgtactttaaatatattgttttgaatatat--gtgtg 29712788  T
Q  163 aataatattggtcgcgctttcaatttagacctt-nnnnnnntaggtgcttgagtatttcaaagagttatttt 233  Q
    |||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||| ||||    
T  29712789 aataatattggttgcgctttcaatttagaccttaaagagaataggtgcttgagtatttcaaagagttttttt 29712860  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 64 - 233
Target Start/End: Complemental strand, 55802760 - 55802593
Alignment:
Q  64 tactagacgtctacccgtgcgacatgcacgagcaatatttatagaattattcttaataatcggtgtactt-aaatatattgttttaaatatattggtgtg 162  Q
    ||||||||||||||| ||||||||  |||   |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  |||||    
T  55802760 tactagacgtctacctgtgcgaca--cacatacaatgtttatagaattattcttaataatcggtgtactttaaatatattgttttgaatatat--gtgtg 55802665  T
Q  163 aataatattggtcgcgctttcaatttagacctt-nnnnnnntaggtgcttgagtatttcaaagagttatttt 233  Q
    |||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||| ||||    
T  55802664 aataatattggttgcgctttcaatttagaccttgaagagaataggtgcttgagtatttcaaagagttttttt 55802593  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 4123791 - 4123700
Alignment:
Q  102 ttatagaattattcttaataatcggtgtacttaaatatattgttttaaatatattggtgtgaataatattggtcgcgctttcaatttagacc 193  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||  |||| |||||||||||||||||||||| |||||||    
T  4123791 ttatagaattattcttaataatcgatgtacttcaatatactgttttgaatatattattgtggataatattggtcgcgctttcaaattagacc 4123700  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 253
Target Start/End: Complemental strand, 4131490 - 4131343
Alignment:
Q  102 ttatagaattattcttaataatcggtgtacttaaatatattgttttaaatatattggtgtgaataatattggtcgcgctttcaatttagaccttnnnnnn 201  Q
    |||||||||||||||||||||||| ||||||| |||  | |||||| ||||||||| ||||||||||||||| ||||||||||| ||||||| |          
T  4131490 ttatagaattattcttaataatcgatgtacttcaatgaactgttttgaatatattgttgtgaataatattggccgcgctttcaaattagaccct-aaaaa 4131392  T
Q  202 ntaggtgcttgagtatttcaaagagttatttttagtgagttcttgatataaa 253  Q
     ||||||||||||||||||||||   | |||||||||||||| | |||||||    
T  4131391 ataggtgcttgagtatttcaaag---tttttttagtgagttcatcatataaa 4131343  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 23900220 - 23900179
Alignment:
Q  118 aataatcggtgtacttaaatatattgttttaaatatattggt 159  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  23900220 aataatcgatgtacttaaatatattgttttgaatatattggt 23900179  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 23900206 - 23900134
Alignment:
Q  146 ttaaatatattggtgtgaataatattggtcgcgctttcaatttagaccttnnnnnnntaggtgcttgagtattt 219  Q
    |||||||||||| | |||||| ||||||||| ||||||||||||||||||       |||||||||||||||||    
T  23900206 ttaaatatattgttttgaata-tattggtcgtgctttcaatttagaccttaaaaaattaggtgcttgagtattt 23900134  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 39947718 - 39947753
Alignment:
Q  23 tagcataaatttctcaacaaactactctttatattt 58  Q
    |||||||||| |||||||||||||||||||||||||    
T  39947718 tagcataaatatctcaacaaactactctttatattt 39947753  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 25406523 - 25406565
Alignment:
Q  22 gtagcataaatttctcaacaaactactctttatatttaaaaat 64  Q
    ||||||||||| |||||||||||||||| |||||||| |||||    
T  25406523 gtagcataaatatctcaacaaactactccttatattttaaaat 25406565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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