View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_high_12 (Length: 328)
Name: NF17853_high_12
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 294
Target Start/End: Original strand, 12249143 - 12249307
Alignment:
| Q |
129 |
ctcctactttttgaggtgacttcaggtcgtaaggactattttcataaaaacatgtttgttggtgttaatgtgtccgacttctggttgaatgaggctttta |
228 |
Q |
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| T |
12249143 |
ctcctgctttttgaggtgacttcatgccttaaggacaattttcataaaatcatgcttgttggtattaatgtgcccgactcctggttaaatgaggcttcta |
12249242 |
T |
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| Q |
229 |
tggttctaaattgaaaaattggtcatgtcccattcttctacttaggtcttcccattggtggtgact |
294 |
Q |
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| T |
12249243 |
tggttct-gattgcaagattggtcatgttccgttcatgtacctaggtcttcctattggtagtgact |
12249307 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 323
Target Start/End: Complemental strand, 21499956 - 21499769
Alignment:
| Q |
136 |
tttttgaggtgacttcaggtcgtaaggactattttcataaaaacatgtttgttggtgttaatgtgtccgacttctggttgaatgaggcttttatggttct |
235 |
Q |
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| T |
21499956 |
tttttgaagtgaccttaggtctcaaggtcaattttcataaaagtatgtttgttagtgttaatgtgtcgaatttctggttgaaggatgattctatggtttt |
21499857 |
T |
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| Q |
236 |
aaattgaaaaattggtcatgtcccattcttctacttaggtcttcccattggtggtgactataggaaactaaacttttgaaaacctttg |
323 |
Q |
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| T |
21499856 |
gaattacaaaattgggcatgtccacttcttttatttgggtctcccaattggtggtgactctcaaaaactaaatttttggaaacctttg |
21499769 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 28507413 - 28507329
Alignment:
| Q |
210 |
tggttgaatgaggcttttatggttctaaattgaaaaattggtcatgtcccattcttctacttaggtcttcccattggtggtgact |
294 |
Q |
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| T |
28507413 |
tggttgaatgaggcttatatggttttgaattgtaaaattggccatgttcccttcttttacttgggtcttcctattggtggtgact |
28507329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 44354790 - 44354748
Alignment:
| Q |
284 |
tggtggtgactataggaaactaaacttttgaaaacctttgatt |
326 |
Q |
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| T |
44354790 |
tggtggtgactataggaaactaaacttttgaaaacctttgatt |
44354748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 20137281 - 20137323
Alignment:
| Q |
284 |
tggtggtgactataggaaactaaacttttgaaaacctttgatt |
326 |
Q |
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| T |
20137281 |
tggtggtgactataggaaactaaacttttgaaaacctttgatt |
20137323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 28427636 - 28427572
Alignment:
| Q |
136 |
tttttgaggtgacttcaggtcgtaaggactattttcataaaaacatgtttgttggtgttaatgtg |
200 |
Q |
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| T |
28427636 |
tttttaaggtgacatcagggcttaaggtcaattttcataaaagcatgcttgtgggtgttaatgtg |
28427572 |
T |
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