View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_high_13 (Length: 284)
Name: NF17853_high_13
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 52730473 - 52730722
Alignment:
| Q |
12 |
aattctgtatagctgatgcaaaggttggagatgtgttgtccaagccaagcaaatagaaaccctggttggctgtaatcctgtgtaatgcaaaatttatctt |
111 |
Q |
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| T |
52730473 |
aattctgtatagctgatgcaaaggttggagatgtgttgtccaagccaagcaaatagaaaccctggttggctgtaatcctgtgtaatgcaaaatttatctt |
52730572 |
T |
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| Q |
112 |
aactatagtaccgtattaaatatgtacttaattaatagcttcatgactagggttctcaattctttcttttaatataacaaaacaatactcatactaatat |
211 |
Q |
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| T |
52730573 |
aactatattaccgtattaattatgtacttaattaatagcttcattactagggttctcaattctttcttttaatat-----actaatactaatactaatat |
52730667 |
T |
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| Q |
212 |
ttctggtttcaaattgcggtttgcaacttaatataaacgattttgaggacttagc |
266 |
Q |
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| T |
52730668 |
ttctggtttcaaattgcggtttgcaacttaatataaacgattttgaggacttagc |
52730722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 7369327 - 7369407
Alignment:
| Q |
12 |
aattctgtatagctgatgcaaaggttggagatgtgttgtccaagccaagcaaatagaaaccctggttggctgtaatcctgt |
92 |
Q |
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|||||||||| |||||||||||||| || |||||||| ||||| |||||||| |||||||| || || ||||||||||||| |
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| T |
7369327 |
aattctgtattgctgatgcaaaggtaggggatgtgttatccaacccaagcaagtagaaaccttgatttgctgtaatcctgt |
7369407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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