View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_high_14 (Length: 268)
Name: NF17853_high_14
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 1255704 - 1255467
Alignment:
| Q |
14 |
aaatgtgaggaataacatttttaaaacataataccaaaatgaacaaacactatatggtcttcttcgaccatcatacatatattaatctttgagaagtttg |
113 |
Q |
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| T |
1255704 |
aaatgtgaggaataacatttttaaaacataataccaaaatgaacaaacactatatggtcttcttcgaccatcatacatata--aatctttgagaagtttg |
1255607 |
T |
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| Q |
114 |
cattttgttggtggaagaattgaagcaaccagaagtatgttatatttatcaacattcgaacagtatcattagactcaacatctaaaattgatttcacttc |
213 |
Q |
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| T |
1255606 |
cattttgttggtggaagaattgaagcaaccagaagtatgttatatttatcaacattcgaacagtatcattagactcaacatctaaaattgattttacttc |
1255507 |
T |
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| Q |
214 |
ttcaaaacgagtatcaaagtccaaccgcgtgtttcaattg |
253 |
Q |
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| T |
1255506 |
ttcaaaacgagtatcaaagtccaaccgcgtgtttcaattg |
1255467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 7827684 - 7827595
Alignment:
| Q |
163 |
caacattcgaacagtatcattagactcaacatctaaaattgatttcacttcttcaaaacgagtatcaaagtccaaccgcgtgtttcaattg |
253 |
Q |
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| T |
7827684 |
caacattcgaacagtatcattacactcaacatgtaaaactgatttcagttctttaaaacgagtatc-aagttcaaccatgtgtttcaattg |
7827595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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